SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16794
Pre Gene Modal
BGIBMGA010618
Annotation
hypothetical_protein_ALC53_11708_[Atta_colombica]
Location in the cell
Nuclear   Reliability : 2.394
 

Sequence

CDS
ATGAACACGGTGAGAAGGGTCATAAGGGACACAAAGGACATCATCATCATCACAAAGGAGACCATGGTGATCACCATAAACATCATCATGAAGGACATCATCACGAGCATGGAGGTGGCCATAAGAAACATTGGGATGAGCATGACCATCATGGCAAACATCATGAACATGGGCATCATCACAAAGGAGGTAAACATCATCACAAAAAACATCACGACAAAGGAGAAGAAACTGAAGGCTACCATAAAAAATACCATAAAGACGAGTACCATAAAGATCATCACTTCTACGATGACCACCACAAAGAAGGCAAACATCACAAACACGGACATCACCATGGACACCACGACAAACATGGCGGACACCATAAGAAGGGCGGTCATCATCACTCCGGTCACGATGAGCATCATCATGGCCATAAAGGACATCACGATAAGCATCATTACGATGAGGATCATAAGGGACATAAAGGTCATCACGGACATGAAGAACATCACCACGATCACCACGAGCACGGAAAGAAGGGTGGCCATGAAGATCACAAGCACTGGGGATTCCATCATGGCAAGCACTGATAACATTATAATTAAGATATTTGGATACTATGTTATGTTCTCACGTTACAGATCCAGAGCCAAACCAATGATGAGGCTCTTATTATTGATATCATGTGTGCTGATTGCAATCCATGCCCGCAATGTTGCTGAGTCTAAAGGTGAAAAGTCCGAATTGGCTGCAGAGGCTGGTGTAGATCTATCAGCAGCGGGTAGTGAACCATCATCCGCAGATCAGGCTCTAGCTGGAACCGAGCACAAAAAAGCAAAGGACAGTCATCACGAACAAGGAGGTGGTCACGAGCACCACGCTAAGCATCACGAAGAACACGGAGAAAAAGGTGACAAAGGTTACAAGTCTCACCATCATCACGACAAAGGCGATCATGGACATCATGAAAAACATCACCACGAAGGCCACCATGACGAACATGGAGGGCATAAAAAGAAACATCACGACGAGCATGACCATCACGGCGAACATCATGAAGCAGCGCATGGACACAAAGGAGGAAAATTCGGTCACAAAAAGGGACATAAGAAAGGTTCTAAAACGACCGGTTTCCACCACAAATCACACAAAGATGAATACCATAAGGAACACAAGTTCTATGACGACTTCCACAAAGGCGGCCATCACCACAAACATGGAGATTTCCACGGCCATCACGACAAGAAAGGAGGACATCACAAAAAGGGCGGACATCACGAAAAGGGACATCACGAAAAACATCATGGCAAAAAAGGACATCACGACAAAGGGCATTACGACGAGGACCACAAAGGTCACAAAGGGCACCACGGTCACGAGGAGCACCACGCCCACCACCACGACCACGGCAAGAAAGCAGGCCATGCAGGCGGCAAAGAATTCGGATATAGCCACGGAAAGAAATCATAA
Protein
MNTVRRVIRDTKDIIIITKETMVITINIIMKDIITSMEVAIRNIGMSMTIMANIMNMGIITKEVNIITKNITTKEKKLKATIKNTIKTSTIKIITSTMTTTKKANITNTDITMDTTTNMADTIRRAVIITPVTMSIIMAIKDITISIITMRIIRDIKVITDMKNITTITTSTERRVAMKITSTGDSIMASTDNIIIKIFGYYVMFSRYRSRAKPMMRLLLLISCVLIAIHARNVAESKGEKSELAAEAGVDLSAAGSEPSSADQALAGTEHKKAKDSHHEQGGGHEHHAKHHEEHGEKGDKGYKSHHHHDKGDHGHHEKHHHEGHHDEHGGHKKKHHDEHDHHGEHHEAAHGHKGGKFGHKKGHKKGSKTTGFHHKSHKDEYHKEHKFYDDFHKGGHHHKHGDFHGHHDKKGGHHKKGGHHEKGHHEKHHGKKGHHDKGHYDEDHKGHKGHHGHEEHHAHHHDHGKKAGHAGGKEFGYSHGKKS

Summary

Uniprot
ProteinModelPortal

Ontologies

GO

Topology

Length:
484
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
62.24776
Exp number, first 60 AAs:
16.87163
Total prob of N-in:
0.94642
POSSIBLE N-term signal
sequence
inside
1  -  125
TMhelix
126  -  148
outside
149  -  484
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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