Gene

KWMTBOMO16792

Annotation

PREDICTED:_glycerophosphocholine_phosphodiesterase_GPCPD1-like_[Papilio_xuthus]

Location

Bomo_Scaf243(+):13546-17983      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.235

CDS

ATGTTCAAACCCTCAGAAGGTAATTTAGAATTGCCAGTAACATGCAATGTAAAACATCGACCTCTTGGAACTGTGAATTTTGGATACCTAACAGTTTGTCCTATACAGGAAAAGCTTTGTAACTTGCAGGTTTCGTATGCCAAGTATTGGGACTCAAGTTGGACAGGGTTAGAAGTGGGACACAGAGGCTTGGGTGCAAGTTTTAAAACAAAAGAAGGAAATGCTATTCGTGAGAATACAATAGCTTCTCTTAAAAAAGCAGCTGCAAGTGGTGCAGATCTGCTAGAGTTTGATGTTCAACTGAGTAAAGATATGATACCAGTTATTTATCATGACTTTTATGTGTGCATATCAATGAAAAGAAAGAAGGAAATTGAATTTACAGAAATGCTTGAATTACCAGTGAAGGACTTGACTTTGGAACACCTACAAAAACTGAAGGTATACCATCTTGTAGAAGGACGAAGTAAAGAAACTTTATTTTTTGATGATGACTTGGACGAGCACCAACCATTTCCGACTTTAGAAGATGCTCTTAAAGCAATAGATATCCATGTTGGATTCAATGTGGAATTAAAATGGACAATGGAAATGAATGATGGCACATTTGAATTAAACAATCCATTTGATATGAACACTTATGTTGATAAAGGTAAGGTGTTGGAAGTGGTACTGAAACATGCTGGTGAACGCCGCATTGTGTTTTCTTGCTTCAATCCAGACATTTGTACTATGGTTAGGAATAAGCAAAACAAATATCCTGTAATGTTTTTGACTGTGGGTATCACTAATAAGTACCAGCCGTACCGGGACCCAAGATGTCTGTCTATCCCGGCGGCCGTACAGAGCGCCGTGAGCTCGGATCTGCTCGGCATCGTCGTGCACACCGAGGATCTGCTCCGTGATCCTACGCAGGTAAGTTAA

Protein

MFKPSEGNLELPVTCNVKHRPLGTVNFGYLTVCPIQEKLCNLQVSYAKYWDSSWTGLEVGHRGLGASFKTKEGNAIRENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHDFYVCISMKRKKEIEFTEMLELPVKDLTLEHLQKLKVYHLVEGRSKETLFFDDDLDEHQPFPTLEDALKAIDIHVGFNVELKWTMEMNDGTFELNNPFDMNTYVDKGKVLEVVLKHAGERRIVFSCFNPDICTMVRNKQNKYPVMFLTVGITNKYQPYRDPRCLSIPAAVQSAVSSDLLGIVVHTEDLLRDPTQVS

Similarity

Belongs to the RNase T2 family.

Uniprot

A0A194PKN3   A0A194R2M2   A0A212F0T5   A0A0L7KNP5   A0A2W1BZT7   A0A2A4IWP3   + More
A0A2A4IV40   A0A2H1X064   B0WPG3   Q16GK4   A0A1Q3FY96   A0A2M4ALH9   A0A1S4G7Y1   A0A1Q3FY88   A0A1Q3FYG6   A0A1Q3FYD2   A0A182GKE4   A0A084W8U8   A0A182J9V2   A0A2M4BGW0   A0A2M4BGX2   W5JAD7   A0A182TER7   V9I6V9   A0A2M4CHL4   A0A453Z005   A0A182SM15   A0A2C9GRA4   A0A182KFG8   A0A182X341   A0A0J7L703   A0A182Q6P8   A0A2M4CHL5   V9I831   A0A2M4CHN0   A0A2J7QNK3   A0A1Y1MYM1   A0A139WH04   A0A182ML41   A0A2J7QNP6   D6WL75   A0A182NC15   A0A1Y1N1M3   A0A182YDJ8   A0A182KTS7   V9I8L2   A0A0C9PN27   V9I8Y4   A0A182RBJ8   A0A3L8DDC4   V9I6X4   A0A182WGR8   V9I6V4   A0A182UWU9   E0VJT1   A0A1B6FGJ7   A0A1B0CK74   A0A182PLN4   A0A1W4WEM6   A0A1B0CZE2   A0A182F2F2   A0A1L8DC78   A0A1B6ME86   A0A0P4VNE4   A0A023FBW1   A0A336KEV4   A0A069DX70   A0A195AVL5   A0A151ILG5   E2ACQ6   A0A195DNM7   A0A0V0G5A2   V5GPA3   N6UC22   A0A0K8TR97   E9ISB5   A0A1B6ETP9   A0A151WHS5   A0A0C9PU55   A0A224XKF3   A0A195FID5   A0A1B6HYY1   A0A026WB24   A0A1B6I264   A0A1B6CYF6   A0A0M8ZUI6   E2BUY4   R4WDJ2   A0A232EQZ8   Q8IQ03   A0A1A9XV81   A0A1B0BC83   A0A0M4EEZ6   B4JQJ1   A0A0J9QVD5   T1PDJ3   A0A1I8MPE4   A0A0A9Y8A0   A0A1A9WUX4  

Pubmed

26354079    22118469    26227816    28756777    17510324    26483478    + More
24438588    20920257    23761445    12364791    28004739    18362917    19820115    25244985    20966253    30249741    20566863    27129103    25474469    26334808    20798317    23537049    26369729    21282665    24508170    23691247    28648823    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17994087    22936249    25315136    25401762    26823975   

EMBL

KQ459601    KPI93887.1    KQ460870    KPJ11769.1    AGBW02011047    OWR47314.1    + More
JTDY01008214    KOB64676.1    KZ149895    PZC78777.1    NWSH01005932    PCG63838.1    PCG63837.1    ODYU01012364    SOQ58642.1    DS232023    EDS32342.1    CH478268    EAT33371.1    GFDL01002496    JAV32549.1    GGFK01008303    MBW41624.1    GFDL01002491    JAV32554.1    GFDL01002485    JAV32560.1    GFDL01002494    JAV32551.1    JXUM01069817    JXUM01069818    JXUM01069819    JXUM01069820    JXUM01069821    JXUM01069822    JXUM01069823    KQ562571    KXJ75581.1    ATLV01021515    KE525319    KFB46642.1    GGFJ01003149    MBW52290.1    GGFJ01003146    MBW52287.1    ADMH02001841    ETN60941.1    JR035942    AEY56808.1    GGFL01000658    MBW64836.1    AAAB01008980    APCN01001728    LBMM01000338    KMR00328.1    AXCN02002066    GGFL01000659    MBW64837.1    JR035941    AEY56807.1    GGFL01000656    MBW64834.1    NEVH01013194    PNF30159.1    GEZM01017308    JAV90781.1    KQ971343    KYB27179.1    AXCM01001931    PNF30163.1    EFA03495.2    GEZM01017309    GEZM01017307    JAV90780.1    JR035940    AEY56806.1    GBYB01002563    GBYB01004875    JAG72330.1    JAG74642.1    JR035938    AEY56804.1    QOIP01000010    RLU18153.1    JR035939    AEY56805.1    JR035937    AEY56803.1    DS235226    EEB13637.1    GECZ01020437    JAS49332.1    AJWK01015872    AJWK01015873    AJWK01015874    AJWK01015875    AJWK01015876    AJWK01015877    AJWK01015878    AJVK01009549    AJVK01009550    AJVK01009551    AJVK01009552    GFDF01010032    JAV04052.1    GEBQ01005741    JAT34236.1    GDKW01002580    JAI54015.1    GBBI01000284    JAC18428.1    UFQS01000338    UFQT01000338    SSX02969.1    SSX23336.1    GBGD01000602    JAC88287.1    KQ976731    KYM76278.1    KQ977120    KYN05593.1    GL438568    EFN68800.1    KQ980724    KYN14099.1    GECL01003554    JAP02570.1    GALX01002537    JAB65929.1    APGK01040621    KB740984    KB630727    KB632357    ENN76202.1    ERL83831.1    ERL93428.1    GDAI01000950    JAI16653.1    GL765324    EFZ16540.1    GECZ01028414    JAS41355.1    KQ983112    KYQ47374.1    GBYB01004873    GBYB01004874    JAG74640.1    JAG74641.1    GFTR01007905    JAW08521.1    KQ981523    KYN40430.1    GECU01027871    JAS79835.1    KK107310    EZA52876.1    GECU01026688    JAS81018.1    GEDC01018821    GEDC01007489    GEDC01007336    GEDC01004878    JAS18477.1    JAS29809.1    JAS29962.1    JAS32420.1    KQ435840    KOX71415.1    GL450772    EFN80521.1    AK417569    BAN20784.1    NNAY01002688    OXU20768.1    AE014134    AAN10382.1    JXJN01011881    CP012523    ALC38867.1    CH916372    EDV99171.1    CM002910    KMY87961.1    KA646764    AFP61393.1    GBHO01015753    GBRD01011620    GBRD01011619    GBRD01011618    GDHC01019411    JAG27851.1    JAG54204.1    JAP99217.1   

Proteomes

UP000053268    UP000053240    UP000007151    UP000037510    UP000218220    UP000002320    + More
UP000008820    UP000069940    UP000249989    UP000030765    UP000075880    UP000000673    UP000075902    UP000075901    UP000075840    UP000075881    UP000076407    UP000036403    UP000075886    UP000235965    UP000007266    UP000075883    UP000075884    UP000076408    UP000075882    UP000075900    UP000279307    UP000075920    UP000075903    UP000009046    UP000092461    UP000075885    UP000192223    UP000092462    UP000069272    UP000078540    UP000078542    UP000000311    UP000078492    UP000019118    UP000030742    UP000075809    UP000078541    UP000053097    UP000053105    UP000008237    UP000215335    UP000000803    UP000092443    UP000092460    UP000092553    UP000001070    UP000095301    UP000091820   

PRIDE

Q8IQ03   

Pfam

PF03009   GDPD        + More
PF00686   CBM_20
PF00445   Ribonuclease_T2
PF04869   Uso1_p115_head
PF04871   Uso1_p115_C
PF18770   Arm_vescicular

Interpro

IPR033506   Gde1        + More
IPR002044   CBM_fam20       
IPR013783   Ig-like_fold       
IPR030395   GP_PDE_dom       
IPR013784   Carb-bd-like_fold       
IPR017946   PLC-like_Pdiesterase_TIM-brl       
IPR034839   CBM20_GPCPD1       
IPR036430   RNase_T2-like_sf       
IPR001568   RNase_T2-like       
IPR033130   RNase_T2_His_AS_2       
IPR033697   Ribonuclease_T2_eukaryotic       
IPR006953   Vesicle_Uso1_P115_head       
IPR041209   P115_Arm_rpt       
IPR016024   ARM-type_fold       
IPR006955   Uso1_p115_C       
IPR011989   ARM-like       

SUPFAM

SSF51695   SSF51695        + More
SSF49452   SSF49452       
SSF55895   SSF55895       
SSF48371   SSF48371       

Gene 3D

2.60.40.10     3.20.20.190     3.90.730.10     1.25.10.10    

CDD

cd05814  CBM20_Prei4
cd01061  RNase_T2_euk

ProteinModelPortal

A0A194PKN3   A0A194R2M2   A0A212F0T5   A0A0L7KNP5   A0A2W1BZT7   A0A2A4IWP3   + More
A0A2A4IV40   A0A2H1X064   B0WPG3   Q16GK4   A0A1Q3FY96   A0A2M4ALH9   A0A1S4G7Y1   A0A1Q3FY88   A0A1Q3FYG6   A0A1Q3FYD2   A0A182GKE4   A0A084W8U8   A0A182J9V2   A0A2M4BGW0   A0A2M4BGX2   W5JAD7   A0A182TER7   V9I6V9   A0A2M4CHL4   A0A453Z005   A0A182SM15   A0A2C9GRA4   A0A182KFG8   A0A182X341   A0A0J7L703   A0A182Q6P8   A0A2M4CHL5   V9I831   A0A2M4CHN0   A0A2J7QNK3   A0A1Y1MYM1   A0A139WH04   A0A182ML41   A0A2J7QNP6   D6WL75   A0A182NC15   A0A1Y1N1M3   A0A182YDJ8   A0A182KTS7   V9I8L2   A0A0C9PN27   V9I8Y4   A0A182RBJ8   A0A3L8DDC4   V9I6X4   A0A182WGR8   V9I6V4   A0A182UWU9   E0VJT1   A0A1B6FGJ7   A0A1B0CK74   A0A182PLN4   A0A1W4WEM6   A0A1B0CZE2   A0A182F2F2   A0A1L8DC78   A0A1B6ME86   A0A0P4VNE4   A0A023FBW1   A0A336KEV4   A0A069DX70   A0A195AVL5   A0A151ILG5   E2ACQ6   A0A195DNM7   A0A0V0G5A2   V5GPA3   N6UC22   A0A0K8TR97   E9ISB5   A0A1B6ETP9   A0A151WHS5   A0A0C9PU55   A0A224XKF3   A0A195FID5   A0A1B6HYY1   A0A026WB24   A0A1B6I264   A0A1B6CYF6   A0A0M8ZUI6   E2BUY4   R4WDJ2   A0A232EQZ8   Q8IQ03   A0A1A9XV81   A0A1B0BC83   A0A0M4EEZ6   B4JQJ1   A0A0J9QVD5   T1PDJ3   A0A1I8MPE4   A0A0A9Y8A0   A0A1A9WUX4  

PDB

4OEC     E-value=2.16559e-07,     Score=130

KEGG

NA   

GO

GO:0047389   GO:2001070   GO:0046475   GO:0030246   GO:0016021   GO:0003723   GO:0033897   GO:0006629   GO:0008565   GO:0006886   GO:0048280   GO:0000139   GO:0008081   GO:0008889   GO:0016020   GO:0004888   GO:0007166   GO:0016773   GO:0006096   GO:0006281   GO:0006259  

PANTHER

PTHR22958:SF1  

Length:

307

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00556

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.00605

outside

1  -  307

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Possibly Positive selection