Gene

KWMTBOMO16786

Annotation

Putative_115_kDa_protein_in_type-1_retrotransposable_element_R1DM-like_Protein_[Tribolium_castaneum]

Location

Bomo_Scaf231(-):9788-11725      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.621 Mitochondrial   Reliability : 1.857

CDS

ATGGGCATGGCACAAATTCAAAGCATAGCTGATGGCCTCTTCCCGGAACACATAGATTTCGAACGGAAAACGAAACCGTCACAGGAGTTCCCAGAGGTGACCGAGGAGGAGATCATCCAACTAAAAGCTCGCATAAAGCTCAGGAAAGCCCCAGGGCCCGACCGGATTCCGCCGGAGATAGTGACTCTAGCAGTAGCAGTAATTCCAGACAGGATAAGGCTTGTGTTGCAGAAGGTGCTGGAGTCTGGCGTCTTCCCCAACAGCTGGAAAACAGCCAGACTAGTCCTGCTAAGAAAACCAGGCAAACCCGCTGAAGATCCTGCGGGGCACAGGCCGCTATGTCTACTGGACTGCTACGGAAAGCTGCTGGAGTCGCTGATCCTAGGCAGAATAGAAAAACAACTAGTACAATCGGACTGTTTACAAGATTCGCAGTACGGGTTCAGAAAGGGGAGGTCCACAGTGGATGCAGCCAACAAGCTACTTGAGATAGCGGAAGACGCGAGACGAGGAACCCACCGCACCAGAAGAATCTGCGCAGTAGTGGCCCTCGACGTCCGTAATGCTTTCAATTCTGCATCGTGGGAGCTCATCCTGGAGGAAATGGCTGCAATAGGTATGCCTCAATACATCTATAATATCATAAACAGCTACCTCCAGGACAGATGCATCATACTGACAGACGCTGAGGGAGGGGTTGTAGTGAAAAAGGTTACCGGTGGTGTTCCGCAGGGGTCGATACTGGGCCCCACGCTGTGGAACATACTGTATGATGGGGTACTGCGCCTCGAACTGGGGGATGGGGCACAATTAATAGGCTTCGCGGACGATTTAGCTCTGGTGGTGTCAGCAAAGAAGGAAGCAGAACTAATGGCAATAACGAATGTAGCCCTACAAAAGATCAGCGCTTGGATGAAGCAAAAGCGGCTACACTTGGCCCCAGAAAAGACCGAGGCAATTGTGCTAAGTGGGCGAAGAAAGCTTAGCGAGATTTGCTTTACCCTCCAGGGCGTCAGGGTGGTTCCAACCGACAAACTGAAATACCTCGGGTTTTGGTTTGACAAAAGTCTGAAGTTCGGCAAACACATTGAAGAAACAACTGGTAAAGCCGAAAGACTGACGACCGCCCTTGGCCAAATCATGCCCAGGAAAGGAGGGCCGAGGTCGAGCAAGCGCAGACTATTGGCGTCCGCAATACAATCTGTGATGTTATATGGAGCACCGGTGTGGGCAAAGGTAATGAATGTAGCGAAGTACAGGAACATGTATAGCAAAGTGCAACGACAGCTGGCAATACGCATCTGTGGAGCTTACCGTACCATATCGCTAGACGCCGTCTTGGTGATAGCGGGCCTGATACCGATAGAACGGCTAGCAAAGGAACGGCAACGCTACTACCACGAGGGGACAAGAACGAGAGAAGAGGAAAGAGCACATACAATAAAAGAATGGGAACGAGACTGGCAGAAGGAGGGAAAAGGTAAGTGGACTCGTACAATCATACCCAACCTTAGGCTCTGGATGGAACGGAAACATGGCGAAACCGACAGACTGCTGACACAGGCCCTAAGTGGGCATGGAGTTTTCAACACTTACCTGCATTCAATAGGGAAAGCAGAAAGCGCAAGTTGCCCATACTGCGAACATGTTGATACACCGGAACATGCCCTATTTCAATGCATAAAGTTCACAGAACTAAGAGGGAAAACGGAGGGAAGTGACGGAAAGGTGACTGTGGAAAACCTGATGGTGAGAATGATCCATAGTAAAGAAGAATGGGATAAATATGCGGGAATGCTCAAAGAGATAATGAGAGTGCGGGAAAAGGACGAAAGACTAAGGCAAGAATCTATCTATAATAATATATAA

Protein

MGMAQIQSIADGLFPEHIDFERKTKPSQEFPEVTEEEIIQLKARIKLRKAPGPDRIPPEIVTLAVAVIPDRIRLVLQKVLESGVFPNSWKTARLVLLRKPGKPAEDPAGHRPLCLLDCYGKLLESLILGRIEKQLVQSDCLQDSQYGFRKGRSTVDAANKLLEIAEDARRGTHRTRRICAVVALDVRNAFNSASWELILEEMAAIGMPQYIYNIINSYLQDRCIILTDAEGGVVVKKVTGGVPQGSILGPTLWNILYDGVLRLELGDGAQLIGFADDLALVVSAKKEAELMAITNVALQKISAWMKQKRLHLAPEKTEAIVLSGRRKLSEICFTLQGVRVVPTDKLKYLGFWFDKSLKFGKHIEETTGKAERLTTALGQIMPRKGGPRSSKRRLLASAIQSVMLYGAPVWAKVMNVAKYRNMYSKVQRQLAIRICGAYRTISLDAVLVIAGLIPIERLAKERQRYYHEGTRTREEERAHTIKEWERDWQKEGKGKWTRTIIPNLRLWMERKHGETDRLLTQALSGHGVFNTYLHSIGKAESASCPYCEHVDTPEHALFQCIKFTELRGKTEGSDGKVTVENLMVRMIHSKEEWDKYAGMLKEIMRVREKDERLRQESIYNNI

Uniprot

D7GXX9   D6WC19   A0A1W7R6C5   J9KJG8   F7IYV2   F7IYU8   + More
F7IYV5   A0A142LX45   T1DG89   T1DG59   T1DCM0   A0A2H8TR36   A0A139WAH4   V5I881   A0A1W7R6I9   A0A139W9J0   A0A023EW96   J9KUM6   V5I8F3   F7IYV3   A0A139W940   A0A139W9A6   A0A139W9B3   A0A139WNC9   A0A139WN93   A0A139W939   A0A2M4ADW9   A0A2M4CS98   J9L6Z9   A0A224XIZ2   N6TYN9   W8ADE4   W8ANK7   A0A2H8TIE5   A0A2M4BDI3   A0A034WR48   A0A2M4BBV9   A0A2M4CSA9   A0A142LX37   A0A2M4BC01   A0A2S2P488   X1X6F1   A0A2M4CKQ7   J9KV04   X1WZ64   J9LVU7   K7JP42   J9KM84   A0A2M4CSI6   F7IYV6   A0A2M4BC28   A0A2M4BC24   A0A2M4BC18   A0A142LX43   A0A0E3W2C5   Q868S0   A0A0K8VPH1   J9KT70   Q868T0   F7IYV7   Q868S4   N6UIP2   J9KPP8   D7EIB0   A0A2S2N8I2   A0A1B6KDF3   A0A224XA82   V5G2Q2   A0A146MAT2   Q868R6   A0A139W8J5   A0A2S2NJ82   V9GZD9   J9JWJ3   A0A2M3Z1C1   J9KT61   A0A2M4BB78   A0A2M4BB89   A0A139W942   A0A2S2NQQ6   Q868S6   A0A139W9I2   A0A2M4CJ33   N6UHH2   A0A2M4BBA0   A0A139WA31   Q868S8   J9LJ80   A0A2M4AK35   J9KNG8   Q868R2   A0A2S2PRL8   Q868Q8   A0A1S4EMG7   Q868R4   A0A3Q0JIB3   J9LM37   A0A2M4CKD9   Q868S2   A0A2M4CJ59  

Pubmed

18362917    19820115    25527032    24330624    24945155    23537049    + More
24495485    25348373    20075255    12644555    26823975    1328871   

EMBL

KQ972160    EFA13619.2    KQ971309    EEZ99146.1    GEHC01000964    JAV46681.1    + More
ABLF02041886    AB593323    BAK38643.1    AB593321    BAK38639.1    AB593325    BAK38646.1    KU543683    AMS38371.1    GALA01001776    JAA93076.1    GALA01000302    JAA94550.1    GALA01001777    JAA93075.1    GFXV01003903    MBW15708.1    KQ971388    KYB24913.1    GALX01005145    JAB63321.1    GEHC01000915    JAV46730.1    KQ972226    KYB24577.1    GAPW01000192    JAC13406.1    ABLF02041557    GALX01004785    JAB63681.1    AB593324    BAK38644.1    KQ972691    KXZ75806.1    KQ972544    KXZ75870.1    KXZ75869.1    KQ971310    KYB29500.1    KYB29499.1    KXZ75807.1    GGFK01005660    MBW38981.1    GGFL01004044    MBW68222.1    ABLF02021100    GFTR01008427    JAW07999.1    APGK01005465    KB736249    ENN83233.1    GAMC01020519    GAMC01020515    JAB86040.1    GAMC01020517    JAB86038.1    GFXV01002090    MBW13895.1    GGFJ01001727    MBW50868.1    GAKP01002292    JAC56660.1    GGFJ01001369    MBW50510.1    GGFL01004046    MBW68224.1    KU543679    AMS38363.1    GGFJ01001370    MBW50511.1    GGMR01011682    MBY24301.1    ABLF02016340    GGFL01001583    MBW65761.1    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    ABLF02011183    ABLF02041884    ABLF02034925    AAZX01012143    AAZX01012194    ABLF02018942    ABLF02041885    GGFL01004047    MBW68225.1    AB593326    BAK38647.1    GGFJ01001439    MBW50580.1    GGFJ01001454    MBW50595.1    GGFJ01001453    MBW50594.1    KU543682    AMS38369.1    HACL01000281    CFW94575.1    AB090817    BAC57910.1    GDHF01029467    GDHF01011533    JAI22847.1    JAI40781.1    ABLF02010223    AB090812    BAC57900.1    AB593327    BAK38648.1    AB090815    BAC57906.1    APGK01033685    KB740885    ENN78512.1    ABLF02009991    ABLF02009992    ABLF02054952    AB593322    BAK38641.1    GGMR01000779    MBY13398.1    GEBQ01030504    JAT09473.1    GFTR01007160    JAW09266.1    GALX01004171    JAB64295.1    GDHC01002080    JAQ16549.1    AB090819    BAC57914.1    KQ973256    KXZ75595.1    GGMR01004600    MBY17219.1    M93691    AAA29365.1    ABLF02013358    ABLF02013361    ABLF02054869    GGFM01001554    MBW22305.1    ABLF02009073    ABLF02030702    ABLF02042963    GGFJ01001164    MBW50305.1    GGFJ01001165    MBW50306.1    KXZ75805.1    GGMR01006838    MBY19457.1    AB090814    BAC57904.1    KQ972255    KYB24568.1    GGFL01001192    MBW65370.1    APGK01020183    KB740172    ENN81190.1    GGFJ01001166    MBW50307.1    KQ971675    KYB24771.1    AB090813    BAC57902.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    GGFK01007771    MBW41092.1    ABLF02005203    ABLF02041316    AB090821    BAC57918.1    GGMR01019493    MBY32112.1    AB090823    BAC57922.1    AB090820    BAC57916.1    ABLF02014650    GGFL01001190    MBW65368.1    AB090816    BAC57908.1    GGFL01001189    MBW65367.1   

Proteomes

UP000007266    UP000007819    UP000019118    UP000002358    UP000079169   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00098   zf-CCHC
PF13966   zf-RVT
PF12017   Tnp_P_element

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR000663   Natr_peptide       
IPR026960   RVT-Znf       
IPR016067   S-AdoMet_deCO2ase_core       
IPR021896   Transposase_37       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF56276   SSF56276       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7GXX9   D6WC19   A0A1W7R6C5   J9KJG8   F7IYV2   F7IYU8   + More
F7IYV5   A0A142LX45   T1DG89   T1DG59   T1DCM0   A0A2H8TR36   A0A139WAH4   V5I881   A0A1W7R6I9   A0A139W9J0   A0A023EW96   J9KUM6   V5I8F3   F7IYV3   A0A139W940   A0A139W9A6   A0A139W9B3   A0A139WNC9   A0A139WN93   A0A139W939   A0A2M4ADW9   A0A2M4CS98   J9L6Z9   A0A224XIZ2   N6TYN9   W8ADE4   W8ANK7   A0A2H8TIE5   A0A2M4BDI3   A0A034WR48   A0A2M4BBV9   A0A2M4CSA9   A0A142LX37   A0A2M4BC01   A0A2S2P488   X1X6F1   A0A2M4CKQ7   J9KV04   X1WZ64   J9LVU7   K7JP42   J9KM84   A0A2M4CSI6   F7IYV6   A0A2M4BC28   A0A2M4BC24   A0A2M4BC18   A0A142LX43   A0A0E3W2C5   Q868S0   A0A0K8VPH1   J9KT70   Q868T0   F7IYV7   Q868S4   N6UIP2   J9KPP8   D7EIB0   A0A2S2N8I2   A0A1B6KDF3   A0A224XA82   V5G2Q2   A0A146MAT2   Q868R6   A0A139W8J5   A0A2S2NJ82   V9GZD9   J9JWJ3   A0A2M3Z1C1   J9KT61   A0A2M4BB78   A0A2M4BB89   A0A139W942   A0A2S2NQQ6   Q868S6   A0A139W9I2   A0A2M4CJ33   N6UHH2   A0A2M4BBA0   A0A139WA31   Q868S8   J9LJ80   A0A2M4AK35   J9KNG8   Q868R2   A0A2S2PRL8   Q868Q8   A0A1S4EMG7   Q868R4   A0A3Q0JIB3   J9LM37   A0A2M4CKD9   Q868S2   A0A2M4CJ59  

PDB

6AR3     E-value=0.00874827,     Score=94

KEGG

105842356    no KO assigned | (RefSeq) uncharacterized LOC105842356

GO

GO:0003964   GO:0008270   GO:0003676   GO:0016021   GO:0005179   GO:0005576   GO:0008295   GO:0004014   GO:0004803   GO:0006313  

Length:

622

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

14.22548

Exp number, first 60 AAs:

0.00021

Total prob of N-in:

0.00567

outside

1  -  622

 

 

Pi

0.241085

Theta

0.245856

Tajima's D

-0.167928

CLR

0

CSRT

0.502924853757312

Interpretation

Uncertain