SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16785
Pre Gene Modal
BGIBMGA004760
Annotation
PREDICTED:_uncharacterized_protein_LOC105842707_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.358
 

Sequence

CDS
ATGTACCGCACACCAACGACGTCTGGAGCCGCGACTAAGCCCGTCACCCCTAGCCCTTCTGCAGCACCGATCGCAGTACAGGACGCTGCCAGAACATTCATCCGCAGGCCTGAAAGAAGCAGAAGGTCCCTGGACAACATGGAGACCTACAAGAAACAGCAGGATAACTATGCTGTAATGCTGAGTGATAAACTCCTCCAGGAATTAATGAAAACTTTTGAAGATATTCCCTCAAAGGTTCGCGAATACCCTCAAATGAGGAAGGATATCAAGAACTTCCTGGAGGTTCAGTCGGATAGGGGCCAGCGTGTCCTCTACGAGCTCAGCAAGCGGATGACGCGTTTAGAAGCAGCAAGAAAACCACTGTCACCCACAGCTTCGACTTCACCAGAATATGAAGATCACATTCTGGAACGCCTGGGTCAAGTGGAAATAAACCTGCAAACGCGGCTAAACGACCTGGAAGCCAAAATGACCTCATCCTTCGAAGAACAAAATGTTCTCCGCGACGACGGCGGCGCTGACATCATCGACAAAATTGTCGACAGAGTCGACGAGGTCGGAGGGGCCATTGACAAAACCGCCGAGAGCGTTAGAGTCATGGTCTGCTCCCAGAACACCCTCGGCGACAAGCTCGATTATATTGCCGCTGATGTCGCGTCAGCAAAAACTGCAATCGACATAGTCGCTCAAGGTGTGGTCACAGGCGAGCAAAGACCTATCTCCAGGTCGTATGCCAACGTCGCGGCCACCAAGTCAGGGCATCGGCCGGCACTACACTCGATGGCGGTCACCCTCGAAGGCAGTCAGGAGACTGCCGGCGAGGTGCTTGAGAGAGTGAGGAAGGCGGTCGATGCCAGGGGTACTGGCCTGAAAATAAGCAAGGTGCGCAAAGCAAAAAACCAAACAGTTATTTTAGGGTGTGACACCGAAGCGGAACTAAACAAGGTGAAAGAAACAATTGAAAGCCGGGGGGAGGGTTTAATTGTCTCCCGTATGAAAAATAAAAACCCGCTTGTCATCCTAAAAGATGTCTTCCTCCCGAGTGACGACGAGGAGATAATTAAAGCGCTTCATATCCAAAACGAGGATATATTTAGGGACTTGTCTCAGGAAGATAAAGAAACGACCATAAAGTTCAAGAAGAGGACAAAAAATCCCAAAACGGCGCACGTCATTGTCCAGGTTGGTCCCGTGGTATGGCAAAGGATGACGGAGGCTGGGGCCCTCTACCTGGACCTGCAAAGGATCAGAGTCGAGGACCAGTCTCCGCTCATCCAATGCACGAGGTGCCTCGCATTTGGACATGGTCGAAAATTTTGCACCGAGAGTGTGGACAGATGCAGTCACTGTGGGGGACCGCATCTGCGCGAGAAATGCGCAGACTTCATCGCAGGGACCGAACCGCAGTGCTGCAACTGCTCACACTCTGGGTTGCGGAAGGCCGACCATAACGCTTTTAGCGCCGAATGCCCGATACGAAAAAAGTGGGATTACTTGGCTCGCGCTAACACAACATATGCATAA
Protein
MYRTPTTSGAATKPVTPSPSAAPIAVQDAARTFIRRPERSRRSLDNMETYKKQQDNYAVMLSDKLLQELMKTFEDIPSKVREYPQMRKDIKNFLEVQSDRGQRVLYELSKRMTRLEAARKPLSPTASTSPEYEDHILERLGQVEINLQTRLNDLEAKMTSSFEEQNVLRDDGGADIIDKIVDRVDEVGGAIDKTAESVRVMVCSQNTLGDKLDYIAADVASAKTAIDIVAQGVVTGEQRPISRSYANVAATKSGHRPALHSMAVTLEGSQETAGEVLERVRKAVDARGTGLKISKVRKAKNQTVILGCDTEAELNKVKETIESRGEGLIVSRMKNKNPLVILKDVFLPSDDEEIIKALHIQNEDIFRDLSQEDKETTIKFKKRTKNPKTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHSGLRKADHNAFSAECPIRKKWDYLARANTTYA

Summary

Pfam
PF00098   zf-CCHC
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF57756   SSF57756       

Ontologies

Topology

Length:
508
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00229
Exp number, first 60 AAs:
0.00124
Total prob of N-in:
0.00578
outside
1  -  508
 
 

Population Genetic Test Statistics

Pi
5.379839
Theta
20.336242
Tajima's D
-0.26454
CLR
0
CSRT
0.301284935753212
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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