Gene

KWMTBOMO16777

Pre Gene Modal

BGIBMGA012644

Annotation

PREDICTED:_ras-related_protein_Rab-23-like_[Bombyx_mori]

Location

Bomo_Scaf223(+):1246-3290      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.14

CDS

ATGTGCGTACGATGCGCGGAGGAGGAGCTGGAGGTGGCCCTGAAGGTGGTGATCGTCGGTGACGGCGGAGTCGGCAAGTCCAGTATGATACAGCGCTACTGCCGCGGCACCTTCACCAGGGACTACAAGAAGACCATCGGGGTCGACTTTCTTGAGAGACAGATCGAGATAGACGGCGAGGAAGTCCGACTGATGCTGTGGGACACGGCGGGCCAGGAGGAGTTCGACGCGATCACCAAGGCGTACTACCGCGGCGCCCACGCCTGCGTGCTCGCCTTCTCCACAACCGACCGAGACTCTTTCTTAGCGCTGCACTCCTGGAAGTTGAAAGTAAGTCTGTCTTATGCTCGGATGAATACAGTAGTAGTTCTTGACAACAGTGATCCGTGA

Protein

MCVRCAEEELEVALKVVIVGDGGVGKSSMIQRYCRGTFTRDYKKTIGVDFLERQIEIDGEEVRLMLWDTAGQEEFDAITKAYYRGAHACVLAFSTTDRDSFLALHSWKLKVSLSYARMNTVVVLDNSDP

Uniprot

H9JSY2   A0A194QF45   A0A212F6T1   A0A437BM64   V5FYB7   D6WRN4   + More
C4WRN6   A0A2S2QFN0   J3JWQ1   A0A2J7QER9   A0A2H1VHP0   A0A067R0K1   A0A1Y1M3N4   A0A1B6IGI0   A0A1B6JTP9   A0A1W4X3Q8   A0A1B6KRG3   A0A1B6GRJ4   A0A0P4VMA0   R4G8N7   A0A165VFY4   A0A023F8Z6   A0A0A9YTJ0   K1QR50   K7J5H1   A0A3Q0IQI9   A0A0L7QXV8   A0A0N0BJ14   A0A195CBJ6   A0A2R7X3S1   E2AZR4   A0A195EGC8   A0A195FF65   F4WY88   A0A158NHS1   A0A195AX51   E2B7Q7   A0A3L8D8F4   A0A2A3E5B8   A0A2C9JH24   V4B4A1   A0A3B4A1H8   A0A3B5LX33   A0A3L8SZK5   A0A3N0XTE7   A0A3Q0SUN0   A0A1I8MPK8   U5EVL0   H0ZRC9   Q503R5   B8A453   I3JTP9   A0A091EWC5   A0A0L0CM89   A0A034WM63   A0A0K8U3Q5   U3JG74   A0A1S3IEG9   A0A1I8P1C7   A0A3M0L115   A8VIF4   A0A146Y9R8   A0A0A1WKS7   A0A1A9ZZZ2   A0A1B0BUG5   A0A1A9YCT5   A0A3B3XIN4   A0A1B0G9L8   A0A087Y0D4   A0A1A9V7X4   A0A369S963   B3S1G6   A0A3Q3M9G5   A0A0S7LPW0   M4A4L7   A0A3B4GXQ9   A0A3Q2WJC5   A0A3Q4H505   A0A3P9BB25   A0A093BVE0   A0A3P8VT21   A0A3B3YTI3   A0A151X6N5   A0A026WZ76   A0A3Q3M9F4   A0A146NUM1   H2UT44   A0A3P9MM68   H2M2N7   A0A3P9IV19   A0A3B4GV30   A0A3Q4MRQ8   A0A3P8NHF6   A0A3P9BBB8  

Pubmed

19121390    26354079    22118469    18362917    19820115    22516182    + More
23537049    24845553    28004739    27129103    25474469    25401762    26823975    22992520    20075255    20798317    21719571    21347285    30249741    15562597    23254933    25463417    30282656    25315136    20360741    23594743    25186727    26108605    25348373    17937392    25830018    30042472    18719581    23542700    24487278    24508170    21551351    17554307   

EMBL

BABH01038906    BABH01038907    KQ459053    KPJ04039.1    AGBW02009975    OWR49440.1    + More
RSAL01000034    RVE51415.1    GALX01005796    JAB62670.1    KQ971354    EFA07061.1    ABLF02031457    AK339845    BAH70556.1    GGMS01007345    MBY76548.1    APGK01036247    APGK01036248    APGK01036249    APGK01036250    BT127669    KB740937    KB631668    AEE62631.1    ENN77764.1    ERL85155.1    NEVH01015306    PNF27081.1    ODYU01002616    SOQ40345.1    KK853035    KDR12233.1    GEZM01041973    JAV80081.1    GECU01021676    JAS86030.1    GECU01005167    JAT02540.1    GEBQ01025935    JAT14042.1    GECZ01004740    JAS65029.1    GDKW01000346    JAI56249.1    ACPB03020901    GAHY01000652    JAA76858.1    KT984801    AMZ00353.1    GBBI01000787    JAC17925.1    GBHO01008668    GBRD01010339    GDHC01018430    JAG34936.1    JAG55485.1    JAQ00199.1    JH817566    EKC36223.1    KQ414699    KOC63452.1    KQ435724    KOX78348.1    KQ978023    KYM98070.1    KK856818    PTY26444.1    GL444277    EFN61043.1    KQ978957    KYN27293.1    KQ981636    KYN38862.1    GL888439    EGI60845.1    ADTU01016033    ADTU01016034    KQ976725    KYM76622.1    GL446201    EFN88270.1    QOIP01000011    RLU16765.1    KZ288386    PBC26482.1    KB199650    ESP05283.1    QUSF01000002    RLW12354.1    RJVU01061435    ROJ36049.1    GANO01000976    JAB58895.1    ABQF01001020    BC095213    BC164825    AAH95213.1    AAI64825.1    BX004843    AERX01006384    AERX01006385    KK719242    KFO62183.1    JRES01000301    KNC32579.1    GAKP01003500    JAC55452.1    GDHF01032539    GDHF01031349    GDHF01021756    JAI19775.1    JAI20965.1    JAI30558.1    AGTO01010618    QRBI01000099    RMC17474.1    EU176872    ABW24032.1    GCES01035444    JAR50879.1    GBXI01014648    JAC99643.1    JXJN01020691    CCAG010022856    AYCK01002067    AYCK01002068    NOWV01000040    RDD43309.1    DS985247    EDV23222.1    GBYX01156951    JAO91488.1    KL229652    KFV04834.1    KQ982476    KYQ56073.1    KK107078    EZA60449.1    GCES01151175    JAQ35147.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000283053    UP000007266    UP000007819    + More
UP000019118    UP000030742    UP000235965    UP000027135    UP000192223    UP000015103    UP000005408    UP000002358    UP000079169    UP000053825    UP000053105    UP000078542    UP000000311    UP000078492    UP000078541    UP000007755    UP000005205    UP000078540    UP000008237    UP000279307    UP000242457    UP000076420    UP000030746    UP000261520    UP000261380    UP000276834    UP000261340    UP000095301    UP000007754    UP000000437    UP000005207    UP000052976    UP000037069    UP000016665    UP000085678    UP000095300    UP000269221    UP000265000    UP000092445    UP000092460    UP000092443    UP000261480    UP000092444    UP000028760    UP000078200    UP000253843    UP000009022    UP000261660    UP000002852    UP000261460    UP000264840    UP000261580    UP000265160    UP000265120    UP000075809    UP000053097    UP000005226    UP000265180    UP000001038    UP000265200    UP000265100   

PRIDE

H9JSY2   

Pfam

PF00071   Ras

Interpro

IPR027417   P-loop_NTPase        + More
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       
IPR020849   Small_GTPase_Ras-type       
IPR034114   Rab23       

SUPFAM

SSF52540   SSF52540       

CDD

cd04106  Rab23_like

ProteinModelPortal

H9JSY2   A0A194QF45   A0A212F6T1   A0A437BM64   V5FYB7   D6WRN4   + More
C4WRN6   A0A2S2QFN0   J3JWQ1   A0A2J7QER9   A0A2H1VHP0   A0A067R0K1   A0A1Y1M3N4   A0A1B6IGI0   A0A1B6JTP9   A0A1W4X3Q8   A0A1B6KRG3   A0A1B6GRJ4   A0A0P4VMA0   R4G8N7   A0A165VFY4   A0A023F8Z6   A0A0A9YTJ0   K1QR50   K7J5H1   A0A3Q0IQI9   A0A0L7QXV8   A0A0N0BJ14   A0A195CBJ6   A0A2R7X3S1   E2AZR4   A0A195EGC8   A0A195FF65   F4WY88   A0A158NHS1   A0A195AX51   E2B7Q7   A0A3L8D8F4   A0A2A3E5B8   A0A2C9JH24   V4B4A1   A0A3B4A1H8   A0A3B5LX33   A0A3L8SZK5   A0A3N0XTE7   A0A3Q0SUN0   A0A1I8MPK8   U5EVL0   H0ZRC9   Q503R5   B8A453   I3JTP9   A0A091EWC5   A0A0L0CM89   A0A034WM63   A0A0K8U3Q5   U3JG74   A0A1S3IEG9   A0A1I8P1C7   A0A3M0L115   A8VIF4   A0A146Y9R8   A0A0A1WKS7   A0A1A9ZZZ2   A0A1B0BUG5   A0A1A9YCT5   A0A3B3XIN4   A0A1B0G9L8   A0A087Y0D4   A0A1A9V7X4   A0A369S963   B3S1G6   A0A3Q3M9G5   A0A0S7LPW0   M4A4L7   A0A3B4GXQ9   A0A3Q2WJC5   A0A3Q4H505   A0A3P9BB25   A0A093BVE0   A0A3P8VT21   A0A3B3YTI3   A0A151X6N5   A0A026WZ76   A0A3Q3M9F4   A0A146NUM1   H2UT44   A0A3P9MM68   H2M2N7   A0A3P9IV19   A0A3B4GV30   A0A3Q4MRQ8   A0A3P8NHF6   A0A3P9BBB8  

PDB

1Z2A     E-value=1.176e-37,     Score=386

KEGG

101746249    K06234 Ras-related protein Rab-23 | (RefSeq) ras-related protein Rab-23-like

GO

GO:0003924   GO:0005525   GO:0019003   GO:0005886   GO:0007265   GO:0016021   GO:0035469   GO:0003140   GO:0071910   GO:0061371   GO:0045335   GO:0005776   GO:0005829   GO:0046039   GO:0060271   GO:0000045   GO:0042308   GO:0006968   GO:0005813   GO:0030054   GO:0097094   GO:0010008   GO:0032482   GO:0006886   GO:0007264   GO:0016020   GO:0004888   GO:0007166   GO:0016773   GO:0006096   GO:0006281   GO:0006259  

PANTHER

PTHR24070  

Length:

129

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02987

Exp number, first 60 AAs:

0.02504

Total prob of N-in:

0.20885

outside

1  -  129

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain