SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16764  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013806
Annotation
PREDICTED:_uncharacterized_protein_LOC105841662_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.104 Mitochondrial   Reliability : 1.794 Nuclear   Reliability : 1.107
 

Sequence

CDS
ATGCACGCTCTCGTCAAGGATCTGGTCGGTGGTATTGCCGATGATGTCGTTGCAGCCAAAAACGAACTCACGGAGGTCGCAAAAGGATTGGCATGCCAATCAAATCCAGCCCCAGTCCCCAGATCGTACGCCAGCGTCGCAGCAGCCAAGCATGTCCACCGTCCTGCACTTCATTCAATGGCGGTCACCCTTGAAGGTAGTCAGGAGACTGCGGACGAGGTGCTCGCCAGGGTGAAAAGGGCGGTCGATGCCAGAGGCACTGGCCTTAAAATAAATAAGGTTCGAAAGGCCAAGAACCAAACGATTATACTGGGCTGTGACACTGAAGAGGAACGAAAGAAAGTCCAAGAAATAATAGAGAGTCGCGGGGATGGACTGCTAGTAGCGCCCATGAAGAACAAGAGCCCTCTCGTCGTCCTGAAGGATGTGTATGTGGATAGTGAGGATGACGATATAATTAAGGCGCTCCACACACAAAATAAGGACATATTTGTGGGTATACCTGAAGAGAACATGGAGATGGTTATCAAATTTAAAAAACGTACAAGGAATCCAAAAACAGCGCACATCGTTCTCCAGGTGAAGCCGAAAGTATGGCAGAGGATGACGGAAGCTGGAGCCCTCTATCTGGACCTTCAAAGGGTCAGAGTCGAGGACCAGTCTCCGCTCATCCAATGCACAAGGTGCCTCGCATTTGGACATGGTCGAAAATTTTGCACTGAGAGTGTGGACAGATGCAGTCACTGTGGAGGACCGCATCTGCGCGCGAGAAATGCGCAGACTTTATCGCAGGGACCGAACCGCAGTGCTGCAACTGCTCACACTCTGGGTTGCGGAAGGCCGACCATAACGCTTTTAGCGCGAATGCCCGGTACGAAAAAAGTGGGACTACTTGGCTCGCGCTAA
Protein
MHALVKDLVGGIADDVVAAKNELTEVAKGLACQSNPAPVPRSYASVAAAKHVHRPALHSMAVTLEGSQETADEVLARVKRAVDARGTGLKINKVRKAKNQTIILGCDTEEERKKVQEIIESRGDGLLVAPMKNKSPLVVLKDVYVDSEDDDIIKALHTQNKDIFVGIPEENMEMVIKFKKRTRNPKTAHIVLQVKPKVWQRMTEAGALYLDLQRVRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLRARNAQTLSQGPNRSAATAHTLGCGRPTITLLARMPGTKKVGLLGSR

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00075   RNase_H
PF00078   RVT_1
PF02966   DIM1
PF01826   TIL
PF00098   zf-CCHC
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR012337   RNaseH-like_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR036397   RNaseH_sf       
IPR002156   RNaseH_domain       
IPR004123   Dim1       
IPR036249   Thioredoxin-like_sf       
IPR002919   TIL_dom       
IPR036084   Ser_inhib-like_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR013087   Znf_C2H2_type       
SUPFAM
SSF56219   SSF56219        + More
SSF53098   SSF53098       
SSF52833   SSF52833       
SSF57567   SSF57567       
SSF57756   SSF57756       
Gene 3D

Ontologies

Topology

Length:
301
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00102
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01231
outside
1  -  301
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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