Silkworm Genome Informatics Database

Gene

KWMTBOMO16763

Annotation

non-LTR_retrotransposon_R1Bmks_ORF2_protein_[Bombyx_mori]

Location

Bomo_Scaf188(+):6336-8766 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.774

CDS

ATGGATTCCCACTGTCCCTATCTACTTTCGGCTTCGGCTTGGGGGCTGCGATATAGGGCTTTGCGTGTCTTGTACATGGGCACTTATGTTACAACCCTTACCTATGCGGCGGCCGTATGGTATTTGCGGGCTGCTGTGCACGTCGTGCGCAGCGTGCTGCTTAGGACGCAGCGCCCGTCGTTGACGCTGCTAACGAAGGCCTACCGTTCGTGCAGCACGGCTGCTTTGCCGGTGTTGGCGGGCGTCCTGCCGGCGGACCTGGAGGTGACTCGTGCTGGACGGAGGATGCGGGAGTGCGAAGGATTGGCGCGGGAGTTGGCGGCGGAGAGACGACGACGGATCGACGGCGATGTCTTGGTAGTTTGGCAGAACAGGTGGGTGTCTGAGGGTAAGGGGAGGGAACTGTACAAGTTCTTTCCCGATGTTGCGGACAGGAAGAAGGCAACGTGGATGGAGCCGGACTATCAGACCTCGCAGATCCTCACGGGTCATGGGATCTTTAATAAGCGGTTGGCGGATATGCGACTGAGGGAGGGGCATGCTTGCGACTGCGGGGCGGTTGAGGAGGATAGGGACCATGTCCTGTGGGAGTGTCCTCTCTATGACGAAATCCGGGGCAGGATGCTCGATGGAATCTCGCGGTCTGAGGTGGGCCCAGTTTACCACGCGGACCTGGTCAGGGACGAGAAAAATTTTCGGCTCTTGCGCGAGTTCGCGCATACATGGCACACGGCGCGCACTGCGCGCGAATCACGAGGACTGCCTGGCGACGAAGAATGTGGGTGA

Protein

MDSHCPYLLSASAWGLRYRALRVLYMGTYVTTLTYAAAVWYLRAAVHVVRSVLLRTQRPSLTLLTKAYRSCSTAALPVLAGVLPADLEVTRAGRRMRECEGLARELAAERRRRIDGDVLVVWQNRWVSEGKGRELYKFFPDVADRKKATWMEPDYQTSQILTGHGIFNKRLADMRLREGHACDCGAVEEDRDHVLWECPLYDEIRGRMLDGISRSEVGPVYHADLVRDEKNFRLLREFAHTWHTARTARESRGLPGDEECG

Uniprot

Q5NTZ0 V9H050 Q7M4J4 A0A2W1BCT4 A0A3S2L6G9 A0A1B6DRM7 + More
A0A1B6E1N0 J9LPJ1 K7JAI1 A0A2R7WGV3 T1I7M8 R4G8U8 J9KI58 J9LQV9 A0A1B6DID3 A0A224XHT6 J9LPX0 J9KPC7 X1XLJ4 J9LPX1 J9L7F2 J9L798 J9JXR0 J9KSJ8

Pubmed

15814816 2447482 17537809 30299944 28756777 20075255 + More

EMBL

AB182560 BAD82946.1 M19755 AAC13649.1 KZ150483 PZC70720.1 + More
RSAL01004017 RVE40194.1 GEDC01008950 JAS28348.1 GEDC01005462 JAS31836.1 ABLF02012872 ABLF02012873 ABLF02012874 ABLF02012875 ABLF02042485 AAZX01006426 KK854804 PTY18884.1 ACPB03032113 GAHY01000347 JAA77163.1 ABLF02012116 ABLF02012122 ABLF02012123 ABLF02014982 GEDC01011900 JAS25398.1 GFTR01004370 JAW12056.1 ABLF02020044 ABLF02034348 ABLF02054803 ABLF02012124 ABLF02005543 ABLF02007045 ABLF02014981 ABLF02008578

Proteomes

UP000283053 UP000007819 UP000002358 UP000015103

PRIDE

Q5NTZ0 V9H050 Q7M4J4

Pfam

PF14529 Exo_endo_phos_2 + More
PF00078 RVT_1

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR001878   Znf_CCHC

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

Q5NTZ0 V9H050 Q7M4J4 A0A2W1BCT4 A0A3S2L6G9 A0A1B6DRM7 + More
A0A1B6E1N0 J9LPJ1 K7JAI1 A0A2R7WGV3 T1I7M8 R4G8U8 J9KI58 J9LQV9 A0A1B6DID3 A0A224XHT6 J9LPX0 J9KPC7 X1XLJ4 J9LPX1 J9L7F2 J9L798 J9JXR0 J9KSJ8

KEGG

105841365 no KO assigned | (RefSeq) uncharacterized LOC105841365

GO

GO:0003964 GO:0016021 GO:0003676 GO:0008270

Length:

261

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.28248

Exp number, first 60 AAs:

22.22123

Total prob of N-in:

0.53803

POSSIBLE N-term signal

sequence

outside

1 - 19

TMhelix

20 - 42

inside

43 - 261

Pi

0.993977

Theta

1.325217

Tajima's D

-0.532808

CLR

1.233341

CSRT

0.258637068146593

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree