Gene

KWMTBOMO16755

Pre Gene Modal

BGIBMGA013867

Annotation

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Bombyx_mori]

Location

Bomo_Scaf171(-):12146-15395      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.318

CDS

ATGTACTGTGAGCGGACGCATCCATCAAAACTTGTGTGGGAGAGAGACGGTTTGGTTATATCTTCCAACACTGATTCGAGATACAGCATAGGTCAAACCATGACAGCGGACGGGAGCGTAACCACGCAACTGAACATATCACACGCGAGGGTCGAAGATGGAGGACTCTTCTCCTGTGTCGCTCATCACGCCGACAATAGCATAGCTCACCATGACAGACTTAATGTATACGGTCCTCCGTATATAAGAACTCTGCCGCCACTGAAGGTTCAAAGCGGACAGAGCGTGACACTTCGATGCCCCTACTATGGGTACCCAGTTAGAGAAATTGCCTGGGAATTCAAAGGGAAAGAAATAATAGCGGACACAACGACACAAACAAATCGCTTCAAAAGATTCACGAACCACACGAGCTTCAGTAAAGAAATTTACGGCCGAAAACCAAAATTAAGAGGAAGAAGACAATCTCCGACAATAACTGATGGGATCCTCAAGATACCAAAAGTTTTTAAGAACGACAACGGTGCTTTGTACTCGTGTATAGTGAAGAGTCCGTCTGGCGAAATGGCCAAGAGGTCCTTTTTGAACTGCTTGTGCGGTGATTCACCCGTTTATTATTCTTGGCTGAAAGATGGGAAGAAGATACCTGTCAATCTAAAGATCGTCGAAAGGAGTCTGGAAGTTTTCAGTGTACTCATAATCAAGAATGTGTCTTTGGAACACTGCGGGGCGTACACGTGCGTCGCCGCCAATCACGTCGCCAAAGTAAACAAAACGGTCAACTTGTACATAAAAGGTAAGCCAAGTCTAAAGGTGCAACAGAAAAGACACCTAGTGAGGAGACCAGTAGAACTGAAACTACTAAGAATACTGGCACAAACCACTAATTAA

Protein

MYCERTHPSKLVWERDGLVISSNTDSRYSIGQTMTADGSVTTQLNISHARVEDGGLFSCVAHHADNSIAHHDRLNVYGPPYIRTLPPLKVQSGQSVTLRCPYYGYPVREIAWEFKGKEIIADTTTQTNRFKRFTNHTSFSKEIYGRKPKLRGRRQSPTITDGILKIPKVFKNDNGALYSCIVKSPSGEMAKRSFLNCLCGDSPVYYSWLKDGKKIPVNLKIVERSLEVFSVLIIKNVSLEHCGAYTCVAANHVAKVNKTVNLYIKGKPSLKVQQKRHLVRRPVELKLLRILAQTTN

Uniprot

A0A2H1VD00   A0A0N1PIJ2   A0A194PQ02   A0A3S2LWI1   H9JWF3   A0A2W1BJR3   + More
A0A0N1I5I7   A0A2H1WVY9   A0A437BUU3   A0A2A4JQ07   A0A0N1IG41   A0A212F605   A0A212EZG7   A0A437ATW3   A0A2H1W603   A0A0N0P9C7   H9JW81   A0A2H1VRY2   A0A212F1J3   A0A0N1IMY1   A0A0N1I4G3   A0A0L7LPU0   H9JW80   A0A0L7L298   A0A0N1I745   A0A336KKP0   A0A336M8I3   A0A026VYJ5   A0A3L8DRQ5   A0A151JRW6   A0A158NJC3   A0A195BJQ9   A0A151IA46   A8JR35   A0A1W4USR1   F4W742   A0A088APY9   A0A1B0FNH0   A0A0N0BC89   A0A1A9ZZV3   A0A1J1HP71   W8BHF6   Q6IDE9   A0A1W4UT57   A0A1W4V5H6   B3P3D4   Q9VEJ5   Q7KSE9   A0A139WPD8   A0A0R1E4W5   A0A139WPP7   A0A139WPF3   B4PVB9   A0A0R1E506   A0A0R1E3C0   A0A0L0C0J5   A0A1I8N7N2   B4N9U7   K7J3G0   A0A232F8U8   A0A2J7PQK1   A0A2J7PQK5   A0A2J7PQP1   A0A182XEU9   A0A182NQ64   A0A182QYC3   A0A182M182   A0A1Y9GLM1   A0A182VI12   A0A182J4M0   A0A182LBP1   Q7Q9I6   A0A1S4GPA3   A0A182U083   A0A182WK19   A0A182RKW3   A0A182FCX3   A0A194RMV6   W5JR02   A0A084WCP8   A0A158NFB0   A0A2H1V5Z3   A0A1A9X0E8   A0A212FI47   Q16J84   A0A1W4UU17   A0A3L8DJ60   B4QKA3   A0A1I8P0C5   E0VT58   B3NFH1   A0A3B0JLE6   Q2M0G8   A0A0S0WFE8   A0A3B0J7S3   A0A1W4UUB7   X2JAR2   A0A1W4UUA6  

Pubmed

26354079    19121390    28756777    22118469    26227816    24508170    + More
30249741    21347285    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    21719571    24495485    26109357    26109356    17994087    18362917    19820115    17550304    26108605    25315136    20075255    28648823    20966253    12364791    20920257    23761445    24438588    17510324    20566863    15632085   

EMBL

ODYU01001867    SOQ38666.1    KQ460353    KPJ15639.1    KQ459602    KPI93210.1    + More
RSAL01000157    RVE45570.1    BABH01029300    KZ150002    PZC75289.1    KQ458889    KPJ04573.1    ODYU01011472    SOQ57225.1    RSAL01000008    RVE53919.1    NWSH01000925    PCG73523.1    KQ460936    KPJ10703.1    AGBW02010096    OWR49171.1    AGBW02011290    OWR46880.1    RSAL01000709    RVE41204.1    ODYU01006568    SOQ48519.1    KQ459547    KPJ00029.1    BABH01025528    ODYU01004080    SOQ43579.1    AGBW02010870    OWR47596.1    KQ459121    KPJ03783.1    KPJ00028.1    JTDY01000433    KOB77196.1    BABH01025482    BABH01025483    BABH01025484    BABH01025485    BABH01025486    BABH01025487    BABH01025488    BABH01025489    BABH01025490    JTDY01003420    KOB69582.1    KQ461071    KPJ09867.1    UFQS01000550    UFQT01000550    SSX04801.1    SSX25164.1    SSX04800.1    SSX25163.1    KK107570    EZA48842.1    QOIP01000005    RLU23107.1    KQ978579    KYN30034.1    ADTU01017524    ADTU01017525    ADTU01017526    ADTU01017527    ADTU01017528    ADTU01017529    ADTU01017530    ADTU01017531    ADTU01017532    ADTU01017533    KQ976453    KYM85408.1    KQ978255    KYM95887.1    AE014297    ABW08696.1    GL887813    EGI69926.1    CCAG010010693    CCAG010010694    CCAG010010695    CCAG010010696    CCAG010010697    KQ435922    KOX68634.1    CVRI01000006    CRK88017.1    GAMC01005845    JAC00711.1    BT014656    AAT27280.1    ABW08697.1    CH954181    EDV48714.1    AAF55426.3    AAS65164.2    KQ971307    KYB29804.1    CM000160    KRK02722.1    KYB29801.1    KYB29803.1    EDW95788.2    KRK02725.1    KRK02724.1    KRK02723.1    JRES01001161    KNC24949.1    CH964232    EDW80662.2    NNAY01000640    OXU27246.1    NEVH01022635    PNF18614.1    PNF18619.1    PNF18616.1    AXCN02001019    AXCN02001020    AXCM01004495    AXCM01004496    APCN01002803    APCN01002804    APCN01002805    APCN01002806    APCN01002807    AAAB01008900    EAA09501.4    KQ460152    KPJ17331.1    ADMH02000362    ETN66827.1    ATLV01022806    ATLV01022807    ATLV01022808    ATLV01022809    ATLV01022810    ATLV01022811    KE525337    KFB47992.1    ADTU01013992    ADTU01013993    ADTU01013994    ADTU01013995    ADTU01013996    ADTU01013997    ADTU01013998    ADTU01013999    ADTU01014000    ADTU01014001    ODYU01000855    SOQ36253.1    AGBW02008436    OWR53400.1    CH478024    EAT34335.1    QOIP01000008    RLU19979.1    CM000363    EDX09526.1    DS235759    EEB16564.1    CH954178    EDV50513.2    OUUW01000002    SPP76230.1    CH379069    EAL30964.5    AE014296    ALI30464.1    SPP76233.1    AHN57989.1   

Proteomes

UP000053240    UP000053268    UP000283053    UP000005204    UP000218220    UP000007151    + More
UP000037510    UP000053097    UP000279307    UP000078492    UP000005205    UP000078540    UP000078542    UP000000803    UP000192221    UP000007755    UP000005203    UP000092444    UP000053105    UP000092445    UP000183832    UP000008711    UP000007266    UP000002282    UP000037069    UP000095301    UP000007798    UP000002358    UP000215335    UP000235965    UP000076407    UP000075884    UP000075886    UP000075883    UP000075840    UP000075903    UP000075880    UP000075882    UP000007062    UP000075902    UP000075920    UP000075900    UP000069272    UP000000673    UP000030765    UP000091820    UP000008820    UP000000304    UP000095300    UP000009046    UP000268350    UP000001819   

PRIDE

H9JWF3    H9JW81    H9JW80    Q6IDE9    Q9VEJ5    Q7KSE9    + More

Pfam

PF00047   ig        + More
PF00041   fn3
PF07679   I-set
PF00078   RVT_1
PF13895   Ig_2
PF02854   MIF4G
PF10523   BEN

Interpro

IPR036179   Ig-like_dom_sf        + More
IPR003598   Ig_sub2       
IPR013151   Immunoglobulin       
IPR013783   Ig-like_fold       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR003961   FN3_dom       
IPR036116   FN3_sf       
IPR013098   Ig_I-set       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR013106   Ig_V-set       
IPR003890   MIF4G-like_typ-3       
IPR016021   MIF4-like_sf       
IPR016024   ARM-type_fold       
IPR018379   BEN_domain       
IPR013087   Znf_C2H2_type       
IPR027413   GROEL-like_equatorial_sf       

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265       
SSF56219   SSF56219       
SSF48371   SSF48371       
SSF48592   SSF48592       

Gene 3D

2.60.40.10     3.60.10.10     1.25.40.180     1.10.560.10    

CDD

cd00063  FN3

ProteinModelPortal

A0A2H1VD00   A0A0N1PIJ2   A0A194PQ02   A0A3S2LWI1   H9JWF3   A0A2W1BJR3   + More
A0A0N1I5I7   A0A2H1WVY9   A0A437BUU3   A0A2A4JQ07   A0A0N1IG41   A0A212F605   A0A212EZG7   A0A437ATW3   A0A2H1W603   A0A0N0P9C7   H9JW81   A0A2H1VRY2   A0A212F1J3   A0A0N1IMY1   A0A0N1I4G3   A0A0L7LPU0   H9JW80   A0A0L7L298   A0A0N1I745   A0A336KKP0   A0A336M8I3   A0A026VYJ5   A0A3L8DRQ5   A0A151JRW6   A0A158NJC3   A0A195BJQ9   A0A151IA46   A8JR35   A0A1W4USR1   F4W742   A0A088APY9   A0A1B0FNH0   A0A0N0BC89   A0A1A9ZZV3   A0A1J1HP71   W8BHF6   Q6IDE9   A0A1W4UT57   A0A1W4V5H6   B3P3D4   Q9VEJ5   Q7KSE9   A0A139WPD8   A0A0R1E4W5   A0A139WPP7   A0A139WPF3   B4PVB9   A0A0R1E506   A0A0R1E3C0   A0A0L0C0J5   A0A1I8N7N2   B4N9U7   K7J3G0   A0A232F8U8   A0A2J7PQK1   A0A2J7PQK5   A0A2J7PQP1   A0A182XEU9   A0A182NQ64   A0A182QYC3   A0A182M182   A0A1Y9GLM1   A0A182VI12   A0A182J4M0   A0A182LBP1   Q7Q9I6   A0A1S4GPA3   A0A182U083   A0A182WK19   A0A182RKW3   A0A182FCX3   A0A194RMV6   W5JR02   A0A084WCP8   A0A158NFB0   A0A2H1V5Z3   A0A1A9X0E8   A0A212FI47   Q16J84   A0A1W4UU17   A0A3L8DJ60   B4QKA3   A0A1I8P0C5   E0VT58   B3NFH1   A0A3B0JLE6   Q2M0G8   A0A0S0WFE8   A0A3B0J7S3   A0A1W4UUB7   X2JAR2   A0A1W4UUA6  

PDB

3DMK     E-value=5.58569e-25,     Score=282

KEGG

105841358    no KO assigned | (RefSeq) Down syndrome cell adhesion molecule-like protein Dscam2

GO

GO:0016021   GO:0003676   GO:0007156   GO:0042802   GO:0005887   GO:0030017   GO:0005515   GO:0008270   GO:0020037   GO:0016020   GO:0004888   GO:0007166   GO:0016773   GO:0006096   GO:0006281   GO:0006259  

Length:

296

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00756

Exp number, first 60 AAs:

0

Total prob of N-in:

0.09746

outside

1  -  296

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.021638

CSRT

0

Interpretation

Uncertain