Silkworm Genome Informatics Database

Gene

KWMTBOMO16745

Annotation

T18197_reverse_transcriptase-like_protein_-_silkworm

Location

Bomo_Scaf161(+):6136-9010 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.278

CDS

ATGATGGCGAGCACCGCACTGTCCCTTATGGGACGGTGTAACCCGGATGGCTGTACACGTGGTAAACACGTGACAGCAGCCCCGATGGACGGACCGCGAGGACCGTCAAGCCTAGCAGGTACCTTCGGGTGGGGCCTTGCGATACCTGCGGGCGAACCCTGTGGTCGGGTTTGCAGCCCGGCCACAGTGGGTTTTTTTCCTGTTGCAAAAAAGTCAAATAAAGAAAATAGACCTGAAGCCTCTGGCCTCCCGCTGGAGTCAGAGAGGACAGGCGATAACCCGACTGTGCGGGGTTCCGCCGGCGCAGATCCTGTGGGTCAGGATGCGCCTGGTTGGACCTGCCAGTTCTGCGAACGAACCTTTTCGACCAACAGGGGTTTGGGTGTCCACAAGCGTAGAGCCCACCCTGTTGAGACCAATACGGATGCCGCTCCGATGATGGTGAAGCGGCGGTGGCATGGCGAGGAAATCGACCTCCTCGCTCGCACCGAGGCCAGGTTGCTCGCTGAGCGGGGTCAGTGCTCGGGTGGAGACCTCTTTGGCGCGCTTCCAGGGTTTGGAAGAACTCTGGAAGCGATTAAGGGACAACGGCGGAGGGAGCCTTATCGGGCATTGGTGCAAGCGCACCTTGCCCGATTTGGTTCCCAGCCGGGTCCCTCGTCAGGGGGGTGCTCGGCCGAGCCTGACTTCCGGCGGGCTTCTGGAGCTGAGGAAGCGGGCGAGGAACGATGCGCCGAAGACGCCGCTGCCTATGATCCATCCGCAGTCGGTCAGATGTCGCCCGATGCCGCTCGGGTTCTCTCCGAACTCCTTGAGGGTTCGGGGAGAAGACGAGCGTGCAGGGCTATGAGACCCAAGACTGCAGGGCGGCGAAACGATTTGCACGATGATCGGACAGCTAGTGCCCACAAAACCAGTAGACAAAAGCGCAGAGCAGAGTACGCGCGTGTGCAGGAACTGTACAAGAAGTGTCGCAGCAGAGCAGCAGCTGAGGTGATCGATGGCGCGTGTGGGGGTGTCGGACACTCGCTCGAGGAGATGGAGACCTATTGGCGACCTATCCTCGAGAGAGTGTCCGATGCACCTGGGCCTACACCGGAAGCTCTTCACGCCCTAGGGCGTGCGGAGTTGCACGGGGGCAATCGCGACTACACCCAGCTGTGGAGGCCGATCTCGGTGGAAGAGATCAAGGCCTCCCGCTTTGACTGGCGAACTTCGCCGGGCCCGGACGGTATACGTTCGGGTCAGTGGCGTGCGGTTCCTGTGCACTTGAAGGCGGAAATGTTCAATGCATGGATGGCACGAGGCGAAATACCCGAAATTCTACGGCAGTGCCGAACCGTCTTTGTGCCTAAGGTGGAGAGACCAGGTGGACCGGGGGAATATCGACCGATCTCGATCGCGTCGATTCCCCTGAGACACTTTCACTCCATCTTGGCCCGGAGGCTGTTGGCTTGCTGCCCCCCTGATGCACGACAGCGCGGATTTATCTGCGCCGACGGTACGCTGGAGAATTCCGCAGTACTGGACGCGGTGCTTGGGGATAGCAGGAAGAAGCTGCGGGAATGTCACGTGGCGGTGCTAGACTTCGCCAAGGCATTTGACACAGTGTCTCACGAGGCACTTGTCGAATTGCTGAGGTTGAGGGGCATGCCCGAACAGTTCTGCGGCTACATTGCTCACCTATACGATACGGCGTCCACCACCTTAGCCGTGAACAATGAAATGAGCAGCCCTGTAAAAGTGGGACGAGGGGTTCGTCAAGGGGACCCTCTGTCGCCGATACTCTTCAACGTGGTGATGGACCTCATCCTGGCTTCCCTGCCGGAGAGGGTCGGGTATAGGTTGGAGATGGAACTCGTGTCCGCTCTGGCCTATGCTGACGACCTAGTCCTGCTTGCGGGGTCGAAGGTAGGGATGCAGGAGTCCATCTCTGCTGTGGACTGTGTCGGTAGGCAGATGGGCCTACGCCTGAATTGCAGGAAAAGCGCGGTTCTGTCTATGATACCGGATGGCCACCGCAAGAAGCATCACTACCTGACTGAGCGAACCTTCAATATTGGAGGTAAGCCGCTCAGGCAGGTGAGTTGTGTTGAGCGGTGGCGATATCTTGGTGTCGATTTTGAGGCCTCTGGATGCGTGACATTAGAGCATAGTATCAGTAGTGCTCTGAATAACATCTCAAGGGCACCTCTCAAACCCCAACAGAGGTTGGAGATTTTGAGAGCTCATCTGATTCCGAGATTCCAGCACGGTTTTGTGCTTGGAAACATCTCGGATGACCGATTGAGAATGCTCGATGTCCAAATCCGGAAAGCAGTCGGACAGTGGCTAAGGCTACCGGCGGATGTGCCCAAGGCATATTATCACGCCGCAGTTCAGGACGGCGGCTTAGCGATCCCATCGGTGCGAGCGACCATCCCGGACCTCATTGTGAGGCGTTTCGGGGGGCTCGACTCGTCACCATGGTCAGTGGCAAGAGCCGCCGCCAAATCTGATAAGATTCGTAAGAAACTGCGGTGGGCTGGAAACAGCTCCGCAGGTTCAGCCGTGTTGACTCCACAACGCAACGACCATCTGTGCGCTTGTTTTGGCGAGAACATCTGCACGCATCTGTTGATGGACGCGAACTTCGCGAATCCACACGCACCCCGACATCCACAAAGTGGATTAGGGAGCGATGCGCGCAGATAA

Protein

MMASTALSLMGRCNPDGCTRGKHVTAAPMDGPRGPSSLAGTFGWGLAIPAGEPCGRVCSPATVGFFPVAKKSNKENRPEASGLPLESERTGDNPTVRGSAGADPVGQDAPGWTCQFCERTFSTNRGLGVHKRRAHPVETNTDAAPMMVKRRWHGEEIDLLARTEARLLAERGQCSGGDLFGALPGFGRTLEAIKGQRRREPYRALVQAHLARFGSQPGPSSGGCSAEPDFRRASGAEEAGEERCAEDAAAYDPSAVGQMSPDAARVLSELLEGSGRRRACRAMRPKTAGRRNDLHDDRTASAHKTSRQKRRAEYARVQELYKKCRSRAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALGRAELHGGNRDYTQLWRPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAGNSSAGSAVLTPQRNDHLCACFGENICTHLLMDANFANPHAPRHPQSGLGSDARR

Uniprot

V9H052 Q8MY64 Q5K671 A0A023EX97 A0A0J7KIZ7 A0A0J7KIJ3 + More
K7JR53 B8Y0J4 K7JWL4 A0A131Z2I9 K7JX42 A0A0R4WRV8 Q76IP0 Q76IP1 K7JPM5 A0A146KWA5 C6F3W3 A0A096XIE1 A0A075A624 A0A3B4CL88

Pubmed

2439905 14999096 25474469 20075255 19350401 26830274 + More
12949131 26823975

EMBL

M16558 AAB59214.1 AB076841 BAC01114.1 AF436853 AAQ04479.1 + More
GBBI01004849 JAC13863.1 LBMM01006940 KMQ90176.1 LBMM01007077 KMQ90064.1 AAZX01002322 FJ461304 ACJ71597.1 AAZX01023287 GEDV01003881 JAP84676.1 AAZX01023288 JQ082370 AFM44926.1 AB097122 BAC82590.1 AB097121 BAC82589.1 AAZX01024756 AAZX01024918 GDHC01017848 JAQ00781.1 EU854578 ACJ46647.1 KF925878 AHN53448.1 KL596651 KER31070.1

Proteomes

UP000036403 UP000002358 UP000261440

PRIDE

V9H052 Q8MY64 Q5K671

Pfam

PF00078   RVT_1        + More
PF00096   zf-C2H2
PF08356   EF_assoc_2
PF08355   EF_assoc_1
PF00071   Ras
PF13202   EF-hand_5

Interpro

IPR013087   Znf_C2H2_type        + More
IPR000477   RT_dom
IPR013567   EF_hand_assoc_2
IPR018247   EF_Hand_1_Ca_BS
IPR020860   MIRO_dom
IPR013566   EF_hand_assoc_1
IPR036236   Znf_C2H2_sf
IPR027417   P-loop_NTPase
IPR001806   Small_GTPase
IPR011992   EF-hand-dom_pair
IPR002048   EF_hand_dom
IPR001005   SANT/Myb

SUPFAM

SSF57667   SSF57667        + More
SSF52540   SSF52540
SSF47473   SSF47473

CDD

cd00167 SANT

ProteinModelPortal

V9H052 Q8MY64 Q5K671 A0A023EX97 A0A0J7KIZ7 A0A0J7KIJ3 + More
K7JR53 B8Y0J4 K7JWL4 A0A131Z2I9 K7JX42 A0A0R4WRV8 Q76IP0 Q76IP1 K7JPM5 A0A146KWA5 C6F3W3 A0A096XIE1 A0A075A624 A0A3B4CL88

PDB

6AR3 E-value=0.05249, Score=89

KEGG

102466437 no KO assigned | (RefSeq) Mir3342, bmo-mir-3342; microRNA 3342

GO

GO:0003964 GO:0003676 GO:0003924 GO:0016021 GO:0005509 GO:0005525 GO:0046872 GO:0006979 GO:0020037 GO:0016020 GO:0004888 GO:0007166 GO:0016773 GO:0006096 GO:0006281 GO:0006259

Length:

897

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00242

Exp number, first 60 AAs:

0.00066

Total prob of N-in:

0.00005

outside

1 - 897

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree