SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16741  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013806
Annotation
PREDICTED:_uncharacterized_protein_LOC105841662_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.264 Mitochondrial   Reliability : 1.467 Nuclear   Reliability : 1.92
 

Sequence

CDS
ATGTACCGCACACCCACGACTTCGGGCGCCGCTAAAAACCCTACCACTCCCAGCCCTGCTACCACAACCGCAGTGGCGCAGGGTGCTGCAAGGACGTTTATCAAAAGACCGGACGCCAAAAGAAGATCACTGGATAATATGGACGTTTATAAAAAGCAGCAACAAAACTACGCTGCACTACCGACTGATCAGCTCCTCCAGGATATAATGAAGACTTTTGAGGATATACCCTCCAAAGTCCAAGAGTACCCTCAGATGAGGAGGGATATCAAACAGTTCCTGGAGGTGCAGTCAGATAAGGGTATACGAGCAATCTTCGAGCTCAGTAGGCGTATCCAAAGTCTCGAAGCAGAGGCCCCAAAAACAAGGACACCTACAGAAACCTTGCCGTCCGAAGTCCAGGATATCATCCTTGGGAAGCTGGGAGAGGTAGAAGCGACACTGACCGAGCGACTGAACAATATGGAGAGAAGTCTGAAAAAGGACATAACAGAACTGAATGACGAAAACGACAGCCGAGGCTCCGACGTGATCGACAAGATCATCGACCGGATCGACGAGACCAAAGATGCCATGGACAGAACGACCGAGGCGGTCGAGAGTCGAATGCACGCGCTCGTTAAGGATCTGGTCGGTGGAATTGCCGAGGATGTCGTTGCAGCCAAAAACGAACTCACGGAGGTCGCAAAAGGATTGGCATGCGAATCAAATCTAGCCCCAGTCCCCAGATCTTACGCCAGCGTCGCAGCAGCCAAGCCCGTCCACCGTCCTGCACTTCATTCAATGGCGGTCACCCTTGAAGGTAGTCAGGAGACTGCAGACGAGGTGCTCGCCAGGGTGAAAAGGGCGGTCGATGCCAGAGGCACCGGCCTTAAAATTAATAAGGTTCGAAAGGCCAAGAACCAAACGATTATACTGGGCTGCGACACTGAAGAGGAACGAAAGAAAGTCCAAGAAATAATAGAGAGTCGCGGGGACGGACTGGTAGTAGCGCCCATGAAGAACAAGAGCCCTCTAGTCGTCCTGAAGGATGTGTTTGTGGATAGTGAGGATGACGATATAATTAAGGCGCTCCACACACAGAATAAGGACGTATTTGTGGGTATACCTGAAGAGAACATGGAGATGGTTATCAAATTTAAAAAACGTACCAGGAATCCAAAGACAGCACACATCGTTCTCCAGGTGAAGCCGAAAGTATGGCAGAGGATGACGGAAGCTGGAGCCCTCTATCTGGACCTTCAGAGGGTCAGAGTCGAGGACCAGTCTCCGCTCATCCAATGCACGAGGTGCCTCGCATTTGGACATGGTCGAAAATTTTGCACCGAGAGTGTGGACAGATGCAGTCACTGTGGAGGACCGCATCTGCGCGAGAAATGCGCAGACTTCATCGCAGGGACCGAACCGCAGTGCTGCAACTGCTCACACTCTGGGTTGCGGAAGGCCGACCATAACGCTTTTAGCGCCGAATGCCCGGTACGAAAAAAGTGGGATTACTTGGCTCGCGCTAACACAACATATGCATAA
Protein
MYRTPTTSGAAKNPTTPSPATTTAVAQGAARTFIKRPDAKRRSLDNMDVYKKQQQNYAALPTDQLLQDIMKTFEDIPSKVQEYPQMRRDIKQFLEVQSDKGIRAIFELSRRIQSLEAEAPKTRTPTETLPSEVQDIILGKLGEVEATLTERLNNMERSLKKDITELNDENDSRGSDVIDKIIDRIDETKDAMDRTTEAVESRMHALVKDLVGGIAEDVVAAKNELTEVAKGLACESNLAPVPRSYASVAAAKPVHRPALHSMAVTLEGSQETADEVLARVKRAVDARGTGLKINKVRKAKNQTIILGCDTEEERKKVQEIIESRGDGLVVAPMKNKSPLVVLKDVFVDSEDDDIIKALHTQNKDVFVGIPEENMEMVIKFKKRTRNPKTAHIVLQVKPKVWQRMTEAGALYLDLQRVRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHSGLRKADHNAFSAECPVRKKWDYLARANTTYA

Summary

Pfam
PF01826   TIL        + More
PF00078   RVT_1
PF14529   Exo_endo_phos_2
PF00098   zf-CCHC
Interpro
IPR002919   TIL_dom        + More
IPR036084   Ser_inhib-like_sf       
IPR001878   Znf_CCHC       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036875   Znf_CCHC_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
SUPFAM
SSF57567   SSF57567        + More
SSF57756   SSF57756       
SSF56219   SSF56219       
Gene 3D
PDB
4UX3     E-value=0.0418929,     Score=87

Ontologies

Topology

Length:
508
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00283
Exp number, first 60 AAs:
0.00283
Total prob of N-in:
0.00578
outside
1  -  508
 
 

Population Genetic Test Statistics

Pi
1.736134
Theta
7.220183
Tajima's D
-2.188982
CLR
0
CSRT
0.00484975751212439
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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