Gene

KWMTBOMO16739

Pre Gene Modal

BGIBMGA014468

Annotation

non-LTR_retrotransposon_CATS_[Danaus_plexippus]

Location

Bomo_Scaf146(-):19015-20755      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.367

CDS

ATGCCACATGCAGGCCTACGCAGACGATGTGGAGATCAAGCTCCTCGGAATAATTTTGGACGAAAAGCTGCTCTTTGGCCGCCATGTACAGTACGTCCTGGGAAAAGCCTCGCGAATATTCAACAAACTGTGCTTGTACTCCCGACCAACCTGGGTGCTCATCCCGAGAACGTGCGCACCATCTATCTCCGAGTCATCGAGCCAATCGTCACCTACGCTGCCGGGGTGTGGGGACACATAGTAAACAAGCGCTACATCAAAAAATCTTTGATGAGCATGCAGCGTGGTTTTGCCCTAAAAGCCATCAGAGGATTCCGCACTATTTCAACCTCCGCTGCTCTGGCTCTCGCACAATTCACCCCTCTAGACCTAAAAATCCGAGAAGTACACCAAATCGAAAAAGTCAGGCTCACTGGGAAAACTGAATTCCTTCCCAATGACATTTCTTATGAGAAACCTGTCCCCGTCAAGGACCTCCTACATCCCGCTAGAAGGCCGACTATCAAACCCATACCCTCCTCTGAACACCGAATTAACTCCGAAATGACGGACAGTACTCTGGTCACTCGCGTATTCACTGACGGAAGTAAGCAGGACGATGGATCAGTTGGAGCCGCATTCGTGCTTTACAGACCCGGCGACACTGAAACATCCGTAACAAAAAAGTACAAATTACACAGTAGCTGCACAGTCTTCCAGGCAGAGCTGTACGCCATCTGGAAAGCCTATTGGGTAAAGGGACACTCGGGTGTCATAGGAAACGAGGAAGCCGATGCGGCTGCCAACAGCGGCGCACGCATGCACAAGGCCCCCGACTACTCGCAGTTCTCAATATCCTACGTGAAACACAAGATTCGCACAGAACACCACGCCATCTGGCAAGCCAGATACGAAAGCTCCCCGCAGGGCTCACACACAAAAACACTACTACCAAAACTGAACGACATCAAAGAACTTAACAAATGCACACAAACAAACTTTCAGCATACACAAATACTCACAGGCCATGGATATCACAAGACATACTTACATCGCTTCAAAATAGCACCAGATGACACCTGCCCCTGCGACGGCACCTCCAGCCAAACTGTAGAACACCTCCTTAAAAACTGCCAAGCGTTCGCTGCGAAAAGGCACAGTCACGAAGAAACGTGCCACGCAGTACAGGTGCCACCATATAATTTACCTGAAATGTTAAAAAAGAAAGCTGCAATCAACTCTTTCACCTCGTTTTGCCAAACAATAATCAACAACATCAAGAAAATAAATGAAAACAATTAG

Protein

MPHAGLRRRCGDQAPRNNFGRKAALWPPCTVRPGKSLANIQQTVLVLPTNLGAHPENVRTIYLRVIEPIVTYAAGVWGHIVNKRYIKKSLMSMQRGFALKAIRGFRTISTSAALALAQFTPLDLKIREVHQIEKVRLTGKTEFLPNDISYEKPVPVKDLLHPARRPTIKPIPSSEHRINSEMTDSTLVTRVFTDGSKQDDGSVGAAFVLYRPGDTETSVTKKYKLHSSCTVFQAELYAIWKAYWVKGHSGVIGNEEADAAANSGARMHKAPDYSQFSISYVKHKIRTEHHAIWQARYESSPQGSHTKTLLPKLNDIKELNKCTQTNFQHTQILTGHGYHKTYLHRFKIAPDDTCPCDGTSSQTVEHLLKNCQAFAAKRHSHEETCHAVQVPPYNLPEMLKKKAAINSFTSFCQTIINNIKKINENN

Uniprot

A0A437B2S6   A0A437BMS3   A0A3S2NBZ7   Q3V5Y4   Q9BLI5   A0A2W1BN41   + More
A0A437BMI0   Q93139   A0A0L7KPW9   H9JYB5   A0A3S3P0A9   A0A1W7R9Y4   A0A2L2YM05   A0A224X5M4   A0A087TAD8   A0A1W4XBW8   A0A0L7L1P2   A0A0K1IK29   A0A0K1IK14   A0A1Y3BBS5   O44317   U5EVA2   A0A087UHT1   A0A087USZ4   A0A142LX31   A0A087TJZ1   A0A087TUG6   A0A087TX99   A0A1B6FQR0   K7JA12   K7JIW0   O44315   L7MBK1   A0A131XRY9   A0A1E7YVD4   A0A142LX39  

Pubmed

11319268    28756777    7623845    15247245    26227816    19121390    + More
26561354    25527032    20075255    25576852   

EMBL

RSAL01000192    RVE44624.1    RSAL01000031    RVE51585.1    RSAL01000249    RVE43511.1    + More
AB211537    BAE44464.1    AB046668    BAB21511.1    KZ149985    PZC75691.1    RSAL01000030    RVE51677.1    D38414    BAA07467.1    JTDY01007234    KOB65358.1    BABH01042977    NCKU01007943    RWS02258.1    GFAH01000444    JAV47945.1    IAAA01038678    LAA08500.1    GFTR01008639    JAW07787.1    KK114278    KFM62077.1    JTDY01003675    KOB69169.1    KP771711    AKU04648.1    KP771712    AKU04650.1    MUJZ01028333    OTF78340.1    AF015813    AAB94039.1    GANO01003496    JAB56375.1    KK119855    KFM76920.1    KK121445    KFM80483.1    KU543676    AMS38357.1    KK115566    KFM65430.1    KK116791    KFM68755.1    KK117168    KFM69738.1    GECZ01017290    JAS52479.1    AAZX01016607    AAZX01023407    AAZX01003640    AAZX01009025    AAZX01023788    AF015489    AAB94030.1    GACK01003634    JAA61400.1    GEFM01006389    JAP69407.1    MAYS01000558    OFC59623.1    KU543680    AMS38365.1   

Proteomes

UP000283053    UP000037510    UP000005204    UP000285301    UP000054359    UP000192223    + More
UP000002358   

PRIDE

Q3V5Y4    Q9BLI5    Q93139    H9JYB5   

Pfam

PF00078   RVT_1        + More
PF00075   RNase_H
PF14529   Exo_endo_phos_2
PF00270   DEAD
PF16012   DUF4780

Interpro

IPR012337   RNaseH-like_sf        + More
IPR000477   RT_dom       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR027417   P-loop_NTPase       
IPR014001   Helicase_ATP-bd       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR031961   DUF4780       

SUPFAM

SSF53098   SSF53098        + More
SSF56219   SSF56219       
SSF52540   SSF52540       

Gene 3D

3.30.420.10     3.60.10.10    

ProteinModelPortal

A0A437B2S6   A0A437BMS3   A0A3S2NBZ7   Q3V5Y4   Q9BLI5   A0A2W1BN41   + More
A0A437BMI0   Q93139   A0A0L7KPW9   H9JYB5   A0A3S3P0A9   A0A1W7R9Y4   A0A2L2YM05   A0A224X5M4   A0A087TAD8   A0A1W4XBW8   A0A0L7L1P2   A0A0K1IK29   A0A0K1IK14   A0A1Y3BBS5   O44317   U5EVA2   A0A087UHT1   A0A087USZ4   A0A142LX31   A0A087TJZ1   A0A087TUG6   A0A087TX99   A0A1B6FQR0   K7JA12   K7JIW0   O44315   L7MBK1   A0A131XRY9   A0A1E7YVD4   A0A142LX39  

KEGG

NA   

GO

GO:0016021   GO:0003676   GO:0004523   GO:0003964   GO:0006979   GO:0020037   GO:0016020   GO:0004888   GO:0007166   GO:0016773   GO:0006096   GO:0006281   GO:0006259  

Length:

426

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.21192

Exp number, first 60 AAs:

0.07301

Total prob of N-in:

0.14382

outside

1  -  426

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain