Silkworm Genome Informatics Database

Gene

KWMTBOMO16720

Pre Gene Modal

BGIBMGA004584

Annotation

putative_zinc_finger_protein_transcription_factor_lame_duck_[Operophtera_brumata]

Location

Bomo_Scaf128(+):19816-20665 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.48 Nuclear Reliability : 2.08

CDS

ATGGCAGATTATGATATCATACCGTGCTACGAAGATGAAGATGTGTTTCACGCAAAAAACGAGGATGTTAACACTCTACACGCGTACTACATGGCGCAGTTCAATCTAGAACTTGAAGGCAACGGTAAAAGCAAGGGAAAACACGATAACTTTAAGTACGGGACTGAAGAGAGTTTCGATTTTGAAGCATTAGATGGCTGGGATAACAATGCGCCCGCAACTAATGTCAGCGGAGCAGATTTCGAAATTATCAATGAAGTAATAGACAGTAATATCAATGAACAGAACATTAAAGAGGTCCTCTTAGATTTAGACAGTATAGACTTTGAAGATAAAAGCAACGGTAACTATGATATCGCTGTAAGCGAAAACCAAAATGGATACGGTGCTAAATAA

Protein

MADYDIIPCYEDEDVFHAKNEDVNTLHAYYMAQFNLELEGNGKSKGKHDNFKYGTEESFDFEALDGWDNNAPATNVSGADFEIINEVIDSNINEQNIKEVLLDLDSIDFEDKSNGNYDIAVSENQNGYGAK

Uniprot

H9J4Z4 A0A2W1BH29 A0A0L7LS16 A0A2A4IZG8 A0A0N1PIA1 A0A2H1VZE5 + More
A0A0N1PGI9 A0A3S2NE44 A0A212ES86

Pubmed

19121390 28756777 26227816 26354079 22118469

EMBL

BABH01025710 KZ150067 PZC74128.1 JTDY01000218 KOB78237.1 NWSH01004650 + More
PCG64818.1 KQ459890 KPJ19581.1 ODYU01005403 SOQ46201.1 KQ458842 KPJ04901.1 RSAL01000078 RVE48730.1 AGBW02012867 OWR44311.1

Proteomes

UP000005204 UP000037510 UP000218220 UP000053240 UP000053268 UP000283053 + More
UP000007151

PRIDE

H9J4Z4

Pfam

PF00096   zf-C2H2        + More
PF01347   Vitellogenin_N
PF09172   DUF1943
PF00094   VWD

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR001747   Lipid_transpt_N
IPR015255   Vitellinogen_open_b-sht
IPR015816   Vitellinogen_b-sht_N
IPR015819   Lipid_transp_b-sht_shell
IPR011030   Lipovitellin_superhlx_dom
IPR001846   VWF_type-D

SUPFAM

SSF57667   SSF57667        + More
SSF56968   SSF56968
SSF48431   SSF48431

Gene 3D

1.25.10.20 2.30.230.10

ProteinModelPortal

H9J4Z4 A0A2W1BH29 A0A0L7LS16 A0A2A4IZG8 A0A0N1PIA1 A0A2H1VZE5 + More
A0A0N1PGI9 A0A3S2NE44 A0A212ES86

KEGG

101742924 K09232 zinc finger protein GLIS1/3 | (RefSeq) zinc finger protein GLI2-like

GO

GO:0003676 GO:0006357 GO:0005634 GO:0000977 GO:0005319

Length:

131

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0002

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.23384

outside

1 - 131

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree