Gene

KWMTBOMO16710

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Scaf116(+):11676-14111      View in EpiBrowser

Full name

Integrin beta      

Location in the cell

Nuclear   Reliability : 2.631

CDS

ATGGGCGACTTTAATGCCAAAGTGGGTGTACAGATGTGTGACGAATCAAGAGTGGGACCACATGGATTTGGAAGCAGGAACGATAGGGGGCAAATGCTCGTTAACTTTCTAGAGCAAGAGGAGCTATTCTTAATGAACTCATTTTTTAAAAAGCAGCCCCAAAGAAAATGGACATGGCGAAGCCCGGACACTGTAACGAAAAATGAGATTGATTTTATCATTGCGGACAAAAAACGGTTATTTAGGGATGTCTCAGTGGTCAACAGGTTTAACACCGGAAGCGACCACCGGCTAGTAAGAGCTACGCTGAGCATAGACACTCGATTGGAAAGATACCGCATGATACAGTCTACACTCCGACCTAGCCAGCTCCAAATCAGTGCAGGTTCAGAAGTTTTCCATAAAACCTTGGAAAATCGATTTGTTAACTTGGAAACCACTGATGATGTTGACGAAAACCTCGAAAATCTGGTCACACTCATGAGGGAAGAGGGTGCAAAATTTTTCAGCGGGAAGCGAACGGGAAAAAAATCCGAACTCTCAGACGAGACGTTGCGACTCATGGCCATACGGCGACATTTCAAAAATTCTGCTTAA

Protein

MGDFNAKVGVQMCDESRVGPHGFGSRNDRGQMLVNFLEQEELFLMNSFFKKQPQRKWTWRSPDTVTKNEIDFIIADKKRLFRDVSVVNRFNTGSDHRLVRATLSIDTRLERYRMIQSTLRPSQLQISAGSEVFHKTLENRFVNLETTDDVDENLENLVTLMREEGAKFFSGKRTGKKSELSDETLRLMAIRRHFKNSA

Similarity

Belongs to the integrin beta chain family.

Feature

chain  Integrin beta

Uniprot

D7F165   A0A3S2KZJ4   A0A437B0R4   D7F157   D7F160   D7F158   + More
A0A2W1BHU6   D7F159   D7F164   D7F166   A0A3S2N805   A0A437BHD1   A0A3S2L6Q1   A0A016WTM3   A0A131YWK0   A0A131ZDH5   A0A016W0A5   A0A1W4UBD7   A0A016V9Q8   A0A016VJ99   A0A016VK03   A0A016TNL5   A0A1S3HCU5   A0A016ULA1   A0A016U8A7   A0A1S3JU44   A0A016SG46   A0A016TK11   A0A016W4R1   A0A2G8L111   A0A2H1VS24   A0A3P9HFJ3   A0A016VWP2   A0A016V4Q8   A0A016V419   A0A1S3JDY7   A0A1S3JCH2   R7VL02   A0A1S3JGK3   A0A2R2MNC1   R7VDL6   A0A016THQ0   A0A3P9KP93   A0A1S3HDJ9   A0A023GFX8   A0A1S3GZC1   R7U2Q7   A0A0L7LVR9   A0A131XMC8   A0A016VUF9   A0A016S1D2   A0A2G8K4B6   W6N9K0   A0A2W1BZV1   A0A016UYH1   W4XDC3   A0A0N4W414   A0A2R2MPD4   A0A0L7LL03   A0A2G9UVW6   A0A2W1BGL1   A0A0L7LK10   A0A2H2JJX7   A0A2H2ITM4   A0A2A4JIH6   A0A2G9UJ87   K7HM73   K7HM74   A0A016W136   A0A2H2JHZ6   A0A0P4VWD0   A0A2H2J622   A0A2H2JFT4   D7F176   K7HDV1   A0A1I7Y0E1   A0A2W1BNL4   K7HBN5  

Pubmed

20470440    28756777    25730766    26830274    29023486    17554307    + More
23254933    26227816    28049606    27129103    26392177   

EMBL

FJ265550    ADI61818.1    RSAL01000359    RVE42210.1    RSAL01000220    RVE44071.1    + More
FJ265542    ADI61810.1    FJ265545    ADI61813.1    FJ265543    ADI61811.1    KZ150353    PZC71243.1    FJ265544    ADI61812.1    FJ265549    ADI61817.1    FJ265551    ADI61819.1    RSAL01001818    RVE40675.1    RSAL01000057    RVE49824.1    RSAL01003087    RVE40344.1    JARK01000126    EYC42577.1    GEDV01005625    JAP82932.1    GEDV01000266    JAP88291.1    JARK01001338    EYC33045.1    JARK01001351    EYC23458.1    JARK01001345    EYC27376.1    EYC27377.1    JARK01001424    EYC04321.1    JARK01001372    EYC15676.1    JARK01001389    EYC10853.1    JARK01001565    EYB89683.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    MRZV01000269    PIK53948.1    ODYU01004088    SOQ43598.1    JARK01001340    EYC31168.1    JARK01001354    EYC21713.1    EYC21986.1    AMQN01035462    KB292293    ELU17851.1    AMQN01039158    KB295056    ELU13765.1    JARK01001435    EYC02484.1    GBBM01003763    JAC31655.1    AMQN01002170    AMQN01002171    KB308559    ELT97455.1    JTDY01000008    KOB79474.1    GEFH01000854    JAP67727.1    JARK01001341    EYC30403.1    JARK01001655    EYB84321.1    MRZV01000899    PIK42832.1    CAVP010052198    CDL93746.1    KZ149907    PZC78256.1    JARK01001358    EYC20230.1    AAGJ04050748    UZAF01016227    VDO23583.1    JTDY01000715    KOB76117.1    KZ345286    PIO74399.1    KZ150150    PZC72845.1    JTDY01000781    KOB75903.1    NWSH01001447    PCG71212.1    KZ346514    PIO69792.1    EYC33365.1    GDKW01001596    JAI54999.1    FJ265561    ADI61829.1    KZ150049    PZC74456.1   

Proteomes

UP000283053    UP000024635    UP000192221    UP000085678    UP000230750    UP000265200    + More
UP000014760    UP000265180    UP000037510    UP000025227    UP000007110    UP000038042    UP000268014    UP000005237    UP000218220    UP000095287   

PRIDE

D7F165    D7F157    D7F160    D7F158    D7F159    D7F164    + More
D7F166    D7F176   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF13520   AA_permease_2
PF00362   Integrin_beta
PF05485   THAP
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR027124   Swc5/CFDP2       
IPR020846   MFS_dom       
IPR002293   AA/rel_permease1       
IPR032695   Integrin_dom_sf       
IPR036465   vWFA_dom_sf       
IPR015812   Integrin_bsu       
IPR002035   VWF_A       
IPR002369   Integrin_bsu_VWA       
IPR038441   THAP_Znf_sf       
IPR006612   THAP_Znf       
IPR016186   C-type_lectin-like/link_sf       
IPR016187   CTDL_fold       
IPR007110   Ig-like_dom       
IPR036179   Ig-like_dom_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF53300   SSF53300       
SSF69179   SSF69179       
SSF56436   SSF56436       
SSF48726   SSF48726       

Gene 3D

3.60.10.10     3.40.50.410     3.30.40.180     3.10.100.10    

CDD

cd06174  MFS

ProteinModelPortal

D7F165   A0A3S2KZJ4   A0A437B0R4   D7F157   D7F160   D7F158   + More
A0A2W1BHU6   D7F159   D7F164   D7F166   A0A3S2N805   A0A437BHD1   A0A3S2L6Q1   A0A016WTM3   A0A131YWK0   A0A131ZDH5   A0A016W0A5   A0A1W4UBD7   A0A016V9Q8   A0A016VJ99   A0A016VK03   A0A016TNL5   A0A1S3HCU5   A0A016ULA1   A0A016U8A7   A0A1S3JU44   A0A016SG46   A0A016TK11   A0A016W4R1   A0A2G8L111   A0A2H1VS24   A0A3P9HFJ3   A0A016VWP2   A0A016V4Q8   A0A016V419   A0A1S3JDY7   A0A1S3JCH2   R7VL02   A0A1S3JGK3   A0A2R2MNC1   R7VDL6   A0A016THQ0   A0A3P9KP93   A0A1S3HDJ9   A0A023GFX8   A0A1S3GZC1   R7U2Q7   A0A0L7LVR9   A0A131XMC8   A0A016VUF9   A0A016S1D2   A0A2G8K4B6   W6N9K0   A0A2W1BZV1   A0A016UYH1   W4XDC3   A0A0N4W414   A0A2R2MPD4   A0A0L7LL03   A0A2G9UVW6   A0A2W1BGL1   A0A0L7LK10   A0A2H2JJX7   A0A2H2ITM4   A0A2A4JIH6   A0A2G9UJ87   K7HM73   K7HM74   A0A016W136   A0A2H2JHZ6   A0A0P4VWD0   A0A2H2J622   A0A2H2JFT4   D7F176   K7HDV1   A0A1I7Y0E1   A0A2W1BNL4   K7HBN5  

KEGG

101740474    no KO assigned | (RefSeq) uncharacterized LOC101740474

GO

GO:0004519   GO:0003964   GO:0003677   GO:0016021  

PANTHER

PTHR23227   PTHR10082  

Subcellular location

Membrane  

Length:

198

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00096

Exp number, first 60 AAs:

0.00096

Total prob of N-in:

0.08390

outside

1  -  198

 

 

Pi

13.318289

Theta

19.523609

Tajima's D

-0.987787

CLR

0

CSRT

0.139643017849108

Interpretation

Uncertain