SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16692
Annotation
T18197_reverse_transcriptase-like_protein_-_silkworm
Location in the cell
Mitochondrial   Reliability : 1.462 Nuclear   Reliability : 1.908
 

Sequence

CDS
ATGGCCGAGATCACGACGCCCACTCCTACCCATAACCTGCACGTGGTACCGCCGCACATTGACCGATACGGGAGGAGGGCAGCACTTGAATCACGTAGTCTTGGTGTAGCCATTGCGGACTACAGCCCTCGGACAACGCGGAGGGAGCCTTATCGGCATTGGTGCAAGCGCACCTTGCCCGATTTGGTTCCCAGCCGGGTCCTCGTCAGGGGGGTGCTCGCCGAGCCTGACTTCCGGCGGGCTTCTGGAGCTGAGGAAGCGGGCGAGAACGATGCGCCGAAGACGCCGCTGCCTATATCCATCCGCAGTCGGTCAGATGTCGCCCGATGCCGCTCGGTTCTCTCCGAACTCCTTGAGGGTACGGGGAGAAGACGAGCGTGCAGGGCTATGAGACCCAAGACTGCAGGGCGGCGAAACGATTTGCACGATGATCGGACAGCTAGTGCCCACAAAACCAGTAGACAAAAGCGCAGGGCAGAGTACGCGCGTGTGCAGGAACTGTACAAGAAGTGTCGCAGCAGAGCAGCAGCTGAGGTGATCGATGGCGCGTGTGGGGTGTCGGACACTCGCTCGAGAGATGGAGACCTATTGGCGACCTATCCTCGAGAGAGTGTCCGATGCACCTGGGCCTACACCGGAAGCTCTTCACGCCCTAGGGCGTGCGGAGTGCACGGGGGCAATCGCGACTACACCCAGCTGTGGAAGCCGATCTCGGTGGAAGAGATCAAGGCCTCCCGCTTTGACTGGCGAACTTCGCCGGGCCCGGACGGTATACGTTCGGGTCAGTGGCGTGCGGTTCCTGTGCACTTGAAGGCGGAAATGTTCAATGCATGGATGGCACGAGGCGAAATACCCGAAATTCTACGGCAGTGCCGAACCGTCTTTGTACCTAAGGTGGAGAGACCAGGCACTTGTCGAATTGCTGAGGTTGAGGGCATGCCCGAACAGTTCTGCGGCTACATTGCTCACCTATACGATACGGCGTCCACCACCTTAGCCGTGAACAATGAAATGAGCAGCCCTGTAAAAGTGGGACGAGGGGTTCGTCAAGGGGACCCTCTGTCGCCGATACTCTTCAACGTGGTGATGGACCTCATCCTGGCTTCCCTGCCGGAGAGGGTCGGGTATAGGTTGGAGATGGAACTCGTGTCCGCTCTGGCCTATGCTGACGACCTAGTCCTGCTTGCGGGGTCGAAGGTAGGGATGCAGGAGTCCATCTCTGCTGTGGACTGTGTCGGTAGGCAGATGGCCTACGCCTGA
Protein
MAEITTPTPTHNLHVVPPHIDRYGRRAALESRSLGVAIADYSPRTTRREPYRHWCKRTLPDLVPSRVLVRGVLAEPDFRRASGAEEAGENDAPKTPLPISIRSRSDVARCRSVLSELLEGTGRRRACRAMRPKTAGRRNDLHDDRTASAHKTSRQKRRAEYARVQELYKKCRSRAAAEVIDGACGVSDTRSRDGDLLATYPRESVRCTWAYTGSSSRPRACGVHGGNRDYTQLWKPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGTCRIAEVEGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQESISAVDCVGRQMAYA

Summary

Pfam
PF00078   RVT_1
Interpro
IPR000477   RT_dom        + More
IPR013087   Znf_C2H2_type       

Ontologies

Topology

Length:
419
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02719
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00852
outside
1  -  419
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain
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