Gene

KWMTBOMO16680

Pre Gene Modal

BGIBMGA014553

Annotation

hypothetical_protein_TcasGA2_TC034914?_partial_[Tribolium_castaneum]

Location

Bomo_Scaf091(+):7216-11241      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.522 Nuclear   Reliability : 2.07

CDS

ATGTTCCATGATGCGACCAAACAGGACGGCCGAAGTCAAAAGGACATGTATGAGCTTCTGTCAGAATTAACCAAAATAGTGGAAGAGATGGGAAACAAAGAGCTGACGATTATAAAGCCCCAAGGAATCGATACAGGTGTAACAAGGAAGATGTTAGAAGTACTGTTCCGTGGAAAGGACATCAAACTAGAATTAAGGACACCTAAAAAAGGAGAAAATACAAACAATACGGAAACAAGAAAACGGGACGATGTAATAGTCATAGAAGGAGGGACAACTACTTATGCGGACACCGTAAAGAGGCTAAAAGAAGGAATAAAAGGGACCGCATCCCTAGAAAACATAAAAGGTGTAAAAAAGACTGCCAAGGGACAAGTACTGGTAAGAGTGATGGGAAATATTGAGGAGATGACTGGGAAAATAAGAGAAATGATGGGAGACAGAAAGGTAAGAAGAACTGGGGGGAGCAAGAAAAAAGTATTACACATAAAGGGAATGGACAGCTCGGTGGAAATGGAGGAAGTAAGGGAGGACTTAAAGTCGACAAACTTGATAAAAAAAGTAGACAGCTTGGAGATAAGATCACTGAGACCGATGGGCGGTGGAAACCAGACGGCAACAGTGATCCTGGATGAAGAGGATGCAGGAAGGCTGCTTGCGGGTGGGAAGATAAGAGTAGGGCTAAATATATGCCACATTCATGAAAGAATTGAACTGCTGAGATGCTACCGGTGCTGGGAATATGGCCACAAAGCGGAAAACTGCAACGTAAAAAAGGACACACAGCTGGCACCGGTAGATGCCCACTCTTCCGGGAGGCATTGGAAACCGCGAAGCGAAGTCAAACCTATAACAAAAATGGTTTTTAAAGTGTTACAGATAAATATGGACCGAGGGAAAGCCGCGCACGACCTACTTCTGGCAACTGCGAGCAAAATGAAAGCGGATCTCGTGATGCTAGCTGAACCCAATAGAAAGCTGGCAAAAGCTGCTGGATGGGAGTGCGACACCAGGGGAGATGCAGCCCTAGTGATTCTTAATAAAACACTGACGGTTTCTGAAATTTATAGGGGGAAGGGATTTGTTGGGTTCAAGATGAAGCACTTTGCCGCGTTCAGCTGTTACATATCTCCCAACTGCAGTTTTGAGGAGTTCAAAGCTGACGTCGATGAGCTTTGGACACTACTTAAAAAACAAAAGACACCGATCCTAGTGGCAGGAGATTTTAACTCTGCATCGAGAGCGTGGGGCAGTAAAGTAACCAACAAAAGGGGCCACTACCTGCTGGAAATGGTGGCGGACCTCGACACTGTCATCATGAATGAAGGCGTGACCCCAACTTTTGAAAGAGGAGACAGAACATCCAGGCCCGACATCACCATGGCCTCTGAAACGCTGGCAGGCAAGATCAGTAATTGGCAAGTGCTCGACGAGGAGACCATGAGCGGACATAAATATATAGCCTACGAGATAAAGCATGTATTGCCTCTATCCCAGTGCCATGCACAGATGAAAAGGTGGAACCTCCAAAGGCTGGACGTAGATAAGTTCACTAAAAGCATGAAAGGAGCGCAGATCTCGACTCCCATGGAACTGGTGCAGGCTACGACGGCAGCGTGTGACGCTTCTATGCCAAAGCAAAACAACCGCAAGAAGAAAGGAGTCTACTGGTGGAACAAGGAAATTGCGGAAGCAAGGAAGGAGTGTTTGAAATGCCGAAGGAGGTACACAAGGAATAACAAAAAGCTAGGAAAAGGGAAAGACAGGGAAAGTAACGAAGAAAATGAACACAAAAAGCAGTATAAGGAAGCGAAACTGGAGCTACAAAGACGAATATGGAAAGCGAAAGACGATAAATGGAGGGAAGTGTGCGAGGAAGTCGACAATGATATATGGGGACTGGGATACAAAATAGTGTCAAAAAAACTACGCGGAAACTCACCGATAAATATGGGCATGGCCCAAATTCAAAGCATAGCTGATGGCCTCTTCCCGGAACACATAGATTTCGAACGGAAAACGAAACCATCACAGGAGTTCCCAGAGGTGACCGAGGAGGAGATCATCCAACTAAAAGCTCGCATAAAGCTCAGGAAAGCCCCAGGGCCCGACCGGATTCCGCCGGAGATAGTGACTCTAGCAGTAGCAGTAATTCCAGACAGGATAAGGCTTGTGTTGCAGAAGGTGCTGGAGTCTGGCGTCTTCCCCAACAGCTGGAAAACAGCCAGACTAGTCCTGCTAAGAAAACCAGGCAAACCCGCTGAAGATCCTGCGGGGCACAGGCCGCTATGTCTACTGGACTGCTACGGAAAGCTGCTGGAGTCGCTGATCCTAGGCAGAATAGAAAAACAACTAGTGCAATCGGACTGTTTACAAGATTCACAGTACGGGTTCAGAAAGGGGAGGTCCACAGTGGATGCAGCCAACAAGCTACTTGAGATAGCGGAAGACGCGAGACGAGGAACCCACCGCACCAGAAGAATCTGCGCAGTAGTGGCCCTCGACGTCCGAAATGCTTTCAATTCTGCATCGTGGGAGCTCATCCTGGAGGAAATGGCTGCAATAGGTATGCCTCAATACATCTATAATATCATAAACAGCTACCTCCAGGACAGATGCATCATACTGACAGACGCCGAGGGAGGGGCTGTAGAGAAAAAGGTTACCGGTGGTGTTCCGCAGGGGTCGATACTGGGCCCCACGCTGTGGAACATACTCTATGATGGGGTACTGCGCCTCGAACTGGGGGACGGGGCAAAATTAATAGGCTTTGCTGACGATTTAGCTCTGGTGGTGTCAGCAAAGAAGGAAGCAGAACTGATGTCAATAACGAACGTAGCTCTAGAAAAGATCAGCGCTTGGATGAAGCAGAAGCGGCTACACTTGGCCCCAGAAAAGACCGAGGCAATTGTCTTAAGTGGGCGAAGGAAGCTGAGCGAGATCTGCTTTACCCTCCAGGGCGTCAGGGTGGTTCCAACCGACAAACTTAAATACCTTGGGTTGTGGTTTGACAAAAGTTTGAAGTTCGGTAAACACATTGAGGAAACAACGGGTAAAGCCGAAAGATTGACGGCCGCCCTTGGCCAAATTATGCCCAGAAAAGGAGGGCCGAGGTCAAGCAAGCGCAGACTACTGGCATCCGCGATACAATCTGTGATGTTATATGGAGCACCGGTGTGGGCAAGGGTAATGAATGTAGCGAAGTACAGGAACATGTATAGCAAAGTGCAACGACAGCTGGCAATACGCATCTGTGGAGCTTACCGTACTATATCGCTAGACGCCGTCTTGGTGATAGCGGGCCTGATACCGATAGAACGGCTAGCAAAGGAACGGCAACGCTACTACCACGAGGGGACAAGAACGAGAGAAGAGGAAAGAGCACATACAATAAAAGAATGGGAACGAGACTGGCAGAAGGAGGGAAAAGGTAAGTGGACTCGTACAATCATACCCAACCTTAGGCTCTGGATGGGACGGAAACATGGCGAAACCGACAGACTGCTGACACAGGCCCTAAGTGGGCATGGAGTTTTCAACACTTACCTGCATGCAATAGGGAAAGCAGAAAGCGCAAGTTGTCCATACTGCGAACATGTTGACACACCGGAACATGCCCTATTTCAATGCAAAAAGTTCTCAGAACTAAGAGAGAAAACGGAGGGAAGTGACGGAAAGGTGACTGTGGAAAACCTGATGGTGAGAATGATCCATAGTAAAGAAGAATGGGATAAATATGCGGGAATGCTCAAAGAGATAATGAGAGTGCGGGAAAAGGACGAAAGACTAAGGCAAGAATCTATCTATAATAATATATAA

Protein

MFHDATKQDGRSQKDMYELLSELTKIVEEMGNKELTIIKPQGIDTGVTRKMLEVLFRGKDIKLELRTPKKGENTNNTETRKRDDVIVIEGGTTTYADTVKRLKEGIKGTASLENIKGVKKTAKGQVLVRVMGNIEEMTGKIREMMGDRKVRRTGGSKKKVLHIKGMDSSVEMEEVREDLKSTNLIKKVDSLEIRSLRPMGGGNQTATVILDEEDAGRLLAGGKIRVGLNICHIHERIELLRCYRCWEYGHKAENCNVKKDTQLAPVDAHSSGRHWKPRSEVKPITKMVFKVLQINMDRGKAAHDLLLATASKMKADLVMLAEPNRKLAKAAGWECDTRGDAALVILNKTLTVSEIYRGKGFVGFKMKHFAAFSCYISPNCSFEEFKADVDELWTLLKKQKTPILVAGDFNSASRAWGSKVTNKRGHYLLEMVADLDTVIMNEGVTPTFERGDRTSRPDITMASETLAGKISNWQVLDEETMSGHKYIAYEIKHVLPLSQCHAQMKRWNLQRLDVDKFTKSMKGAQISTPMELVQATTAACDASMPKQNNRKKKGVYWWNKEIAEARKECLKCRRRYTRNNKKLGKGKDRESNEENEHKKQYKEAKLELQRRIWKAKDDKWREVCEEVDNDIWGLGYKIVSKKLRGNSPINMGMAQIQSIADGLFPEHIDFERKTKPSQEFPEVTEEEIIQLKARIKLRKAPGPDRIPPEIVTLAVAVIPDRIRLVLQKVLESGVFPNSWKTARLVLLRKPGKPAEDPAGHRPLCLLDCYGKLLESLILGRIEKQLVQSDCLQDSQYGFRKGRSTVDAANKLLEIAEDARRGTHRTRRICAVVALDVRNAFNSASWELILEEMAAIGMPQYIYNIINSYLQDRCIILTDAEGGAVEKKVTGGVPQGSILGPTLWNILYDGVLRLELGDGAKLIGFADDLALVVSAKKEAELMSITNVALEKISAWMKQKRLHLAPEKTEAIVLSGRRKLSEICFTLQGVRVVPTDKLKYLGLWFDKSLKFGKHIEETTGKAERLTAALGQIMPRKGGPRSSKRRLLASAIQSVMLYGAPVWARVMNVAKYRNMYSKVQRQLAIRICGAYRTISLDAVLVIAGLIPIERLAKERQRYYHEGTRTREEERAHTIKEWERDWQKEGKGKWTRTIIPNLRLWMGRKHGETDRLLTQALSGHGVFNTYLHAIGKAESASCPYCEHVDTPEHALFQCKKFSELREKTEGSDGKVTVENLMVRMIHSKEEWDKYAGMLKEIMRVREKDERLRQESIYNNI

Uniprot

A0A139WAH4   A0A139WNC9   A0A139WN93   A0A139W940   J9KJG8   A0A139W9B3   + More
A0A139W939   F7IYV5   A0A139W9A6   F7IYU8   F7IYV2   D6WC19   V5I881   A0A2H8TR36   A0A139W9J0   J9JWJ3   X1WZ64   J9KM84   T1DCM0   A0A224XIZ2   T1DG89   T1DG59   A0A142LX45   F7IYV6   A0A2M4CS98   J9LVU7   J9KUM6   A0A2M4ADW9   A0A2S2NQQ6   A0A139W942   A0A034WR48   A0A2M4BBV9   A0A2M4BC28   A0A2M4BC24   A0A2M4BC01   A0A2M4BC18   J9K6F0   A0A142LX43   W8ADE4   W8ANK7   A0A2H8TIE5   J9KNS1   A0A142LX37   F7IYV3   A0A0K8VPH1   A0A2M4CSA9   J9JY94   Q868S4   A0A2M4BDI3   A0A2M4CSI6   F7IYV7   J9KT61   A0A2S2PRL8   A0A2M4BB78   A0A2M4BB89   A0A2M3Z1C1   X1WJY4   D7EIB0   Q868S6   X1WXT5   A0A2M4BBA0   A0A139WA31   A0A2S2PEZ7   J9LA43   A0A2M4AK35   Q868S0   A0A139W8J5   Q9N9Z1   J9L0J0   Q868T0   A0A2M4BCE1   J9LQQ1   J9LM37   Q868S8   V9GZD3   A0A2M4CJ33   J9KNN8   Q868R6   A0A2S2P7D1   Q868R2   Q868R4   A0A0J7KIY5   Q868R0   J9LBG0   J9M6A5   Q868Q8  

Pubmed

18362917    19820115    24330624    25527032    25348373    24495485    + More
12644555    1328871   

EMBL

KQ971388    KYB24913.1    KQ971310    KYB29500.1    KYB29499.1    KQ972691    + More
KXZ75806.1    ABLF02041886    KQ972544    KXZ75869.1    KXZ75807.1    AB593325    BAK38646.1    KXZ75870.1    AB593321    BAK38639.1    AB593323    BAK38643.1    KQ971309    EEZ99146.1    GALX01005145    JAB63321.1    GFXV01003903    MBW15708.1    KQ972226    KYB24577.1    ABLF02013358    ABLF02013361    ABLF02054869    ABLF02011183    ABLF02041884    ABLF02018942    ABLF02041885    GALA01001777    JAA93075.1    GFTR01008427    JAW07999.1    GALA01001776    JAA93076.1    GALA01000302    JAA94550.1    KU543683    AMS38371.1    AB593326    BAK38647.1    GGFL01004044    MBW68222.1    ABLF02034925    ABLF02041557    GGFK01005660    MBW38981.1    GGMR01006838    MBY19457.1    KXZ75805.1    GAKP01002292    JAC56660.1    GGFJ01001369    MBW50510.1    GGFJ01001439    MBW50580.1    GGFJ01001454    MBW50595.1    GGFJ01001370    MBW50511.1    GGFJ01001453    MBW50594.1    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460    KU543682    AMS38369.1    GAMC01020519    GAMC01020515    JAB86040.1    GAMC01020517    JAB86038.1    GFXV01002090    MBW13895.1    ABLF02018808    KU543679    AMS38363.1    AB593324    BAK38644.1    GDHF01029467    GDHF01011533    JAI22847.1    JAI40781.1    GGFL01004046    MBW68224.1    ABLF02007989    AB090815    BAC57906.1    GGFJ01001727    MBW50868.1    GGFL01004047    MBW68225.1    AB593327    BAK38648.1    ABLF02009073    ABLF02030702    ABLF02042963    GGMR01019493    MBY32112.1    GGFJ01001164    MBW50305.1    GGFJ01001165    MBW50306.1    GGFM01001554    MBW22305.1    ABLF02011238    AB593322    BAK38641.1    AB090814    BAC57904.1    ABLF02004854    ABLF02041317    GGFJ01001166    MBW50307.1    KQ971675    KYB24771.1    GGMR01015159    MBY27778.1    ABLF02018098    GGFK01007771    MBW41092.1    AB090817    BAC57910.1    KQ973256    KXZ75595.1    AJ278684    CAB99192.1    ABLF02027248    AB090812    BAC57900.1    GGFJ01001541    MBW50682.1    ABLF02030663    ABLF02041312    ABLF02014650    AB090813    BAC57902.1    M93690    AAA29363.1    GGFL01001192    MBW65370.1    ABLF02023257    AB090819    BAC57914.1    GGMR01012748    MBY25367.1    AB090821    BAC57918.1    AB090820    BAC57916.1    LBMM01006954    KMQ90166.1    AB090822    BAC57920.1    ABLF02021645    ABLF02020969    AB090823    BAC57922.1   

Proteomes

UP000007266    UP000007819    UP000036403   

PRIDE

Q9N9Z1   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00098   zf-CCHC
PF00075   RNase_H
PF12017   Tnp_P_element
PF13966   zf-RVT

Interpro

IPR000477   RT_dom        + More
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000663   Natr_peptide       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       
IPR021896   Transposase_37       
IPR026960   RVT-Znf       
IPR016067   S-AdoMet_deCO2ase_core       

SUPFAM

SSF57756   SSF57756        + More
SSF56219   SSF56219       
SSF53098   SSF53098       
SSF56276   SSF56276       

Gene 3D

3.60.10.10     3.30.420.10    

ProteinModelPortal

A0A139WAH4   A0A139WNC9   A0A139WN93   A0A139W940   J9KJG8   A0A139W9B3   + More
A0A139W939   F7IYV5   A0A139W9A6   F7IYU8   F7IYV2   D6WC19   V5I881   A0A2H8TR36   A0A139W9J0   J9JWJ3   X1WZ64   J9KM84   T1DCM0   A0A224XIZ2   T1DG89   T1DG59   A0A142LX45   F7IYV6   A0A2M4CS98   J9LVU7   J9KUM6   A0A2M4ADW9   A0A2S2NQQ6   A0A139W942   A0A034WR48   A0A2M4BBV9   A0A2M4BC28   A0A2M4BC24   A0A2M4BC01   A0A2M4BC18   J9K6F0   A0A142LX43   W8ADE4   W8ANK7   A0A2H8TIE5   J9KNS1   A0A142LX37   F7IYV3   A0A0K8VPH1   A0A2M4CSA9   J9JY94   Q868S4   A0A2M4BDI3   A0A2M4CSI6   F7IYV7   J9KT61   A0A2S2PRL8   A0A2M4BB78   A0A2M4BB89   A0A2M3Z1C1   X1WJY4   D7EIB0   Q868S6   X1WXT5   A0A2M4BBA0   A0A139WA31   A0A2S2PEZ7   J9LA43   A0A2M4AK35   Q868S0   A0A139W8J5   Q9N9Z1   J9L0J0   Q868T0   A0A2M4BCE1   J9LQQ1   J9LM37   Q868S8   V9GZD3   A0A2M4CJ33   J9KNN8   Q868R6   A0A2S2P7D1   Q868R2   Q868R4   A0A0J7KIY5   Q868R0   J9LBG0   J9M6A5   Q868Q8  

PDB

1WDU     E-value=5.01964e-13,     Score=185

KEGG

NA   

GO

GO:0003676   GO:0008270   GO:0016021   GO:0005179   GO:0005576   GO:0003964   GO:0004519   GO:0004523   GO:0004803   GO:0006313   GO:0008295   GO:0004014   GO:0007608   GO:0016020   GO:0005975   GO:0046835   GO:0016773   GO:0006096   GO:0006281   GO:0006259  

Length:

1272

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

21.15526

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00002

outside

1  -  1272

 

 

Pi

3.484797

Theta

5.990565

Tajima's D

-1.590359

CLR

0.009334

CSRT

0.0450477476126194

Interpretation

Uncertain