SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16678  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA010204
Annotation
30K_protein_18_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.336
 

Sequence

CDS
ATGCAGCCGACATACGACTCTACGATATACTGTCTGCCGGTAGTGAGCGAAGGACCACACGAGATGGACCCATTCGACAAGCTCCCCAACTACGTGACCAACGTGGACCTGAAGTATCCGTACTCAGACCTGCCGTACATAGGGCAGTACAAGCTGCTCAAGCTCCCCTTTACTGGAGAGCTGATCGAACATGTCGACTACTGGGGCGAGGGGAGGATCGTCAACGGGGGACTGTATTCGGGCTTCCGCAACTGCTACAACGTAAACCGACAGTACCAAGAGGTCAGCAACGGGCCCGACAAGGGTCGCAAGATCCCCAACAGGATCCCGGTGCGCGACGAGAACGACTGCGACACCCGGGCTTACATCAAGGATGACTCGGTCAAAATAGTGACGCTCATGAGCGCGCCCATCATTCCGAACAGCGCCAGAGACATTACGAGAATCGTTAACGAGCGCGTCGGCATGGTCGTCATCTACGGAATGCCGGTAGAGTCCCAGGGTATTAAGCTTCTGGCTGCCGAGCTAAAGAACAAGCTTCTGCTGTACTGTCCCGACTACGAGCTGTCCGCTTACTTACAGGAGCCGACAATGATGGACTCGCACGTGGCTTTCCTCAACAAGCAACTTCTTATGGATCTGCTGTTCAAGTACGTGTCGACCGGGGACTACAACAAGGCAGTGACTATCACGAAGTCCTTGCAAGATGATAACTTGTGGTCCGCCGGACACCACGATATAGTCAATGACTTTTTCCCTTCGGAAATCAAATTGATCACCAAGCAAGAAAGGGTAAAAATCATCGGAAGATATTACAATCAAGCTCTGAAGCTGGACGCCAATGTTGACAGGTACAACGACCGCCTGGCCTGGGGAGACAGCAAGGACAAAACTAGTCACAGAGTGAGCTGGAAGCTTATCCCGGTATGGGAGAATAACAAGCTGCTGTATAAAATAATGAACACTGAACATACTATGTACCTGAAGCTGGACGTGAACGTAGACGGGTACGGAGACAGGCAAGCGTGGGGCTCCAACAACTCGAACGAGAAGCGCCACCTGTGGAAGCTGACGCCTGTAGTGCTGGAGACCGGCAACGTCTTACTCATAGAGAACCACGAGTACGGGCAGAGTCTGAAGCTGGACGCGCACGTGGACAGGTACGGCGACCGCCTGCTCTGGGGAAACAACGGAAACGTCGATGGTAACCCTGGCTACTTCGGCTGGGTCATCAACGCGTGGCCGTAG
Protein
MQPTYDSTIYCLPVVSEGPHEMDPFDKLPNYVTNVDLKYPYSDLPYIGQYKLLKLPFTGELIEHVDYWGEGRIVNGGLYSGFRNCYNVNRQYQEVSNGPDKGRKIPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMVVIYGMPVESQGIKLLAAELKNKLLLYCPDYELSAYLQEPTMMDSHVAFLNKQLLMDLLFKYVSTGDYNKAVTITKSLQDDNLWSAGHHDIVNDFFPSEIKLITKQERVKIIGRYYNQALKLDANVDRYNDRLAWGDSKDKTSHRVSWKLIPVWENNKLLYKIMNTEHTMYLKLDVNVDGYGDRQAWGSNNSNEKRHLWKLTPVVLETGNVLLIENHEYGQSLKLDAHVDRYGDRLLWGNNGNVDGNPGYFGWVINAWP

Summary

Pfam
PF03260   Lipoprotein_11
Interpro
IPR004943   Lipoprotein_11        + More
IPR042046   Lipoprotein_11_N       
Gene 3D
PDB
3PUB     E-value=9.99584e-34,     Score=359

Ontologies

Topology

Length:
415
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02103
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01379
outside
1  -  415
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
26280517 IPMADVPTVVR 100.00 2e-05
24402669 IPNQDFVVFQEYR 100.00 2e-05
29197581 YYNQAIK 100.00 2e-05
20822545 YPYSDLPYIGQYK 100.00 5e-05
26280517 VGIIGSCTNSSYEDMGR 100.00 5e-05
25044914 VGKPVICATQMIESMVK 100.00 5e-05
28467696 VGMDDAGVYTITAK 100.00 5e-05
29197581 ITPVVIETGNVIIIENHEYGQSIK 100.00 5e-05
20822545 QYQEVSNGPDMGR 100.00 6e-04
24402669 MVVIVDPHIK 100.00 0.001
20822545 IVTLMSAPIIPNSAR 100.00 0.014
26280517 IPVAVATTSTPKSDSINVVR 100.00 0.018
28467696 IPVIAATIYR 100.00 0.018
29197581 IPNRIPVRDENDCDTR 100.00 0.018
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