SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16677  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA014524
Annotation
PREDICTED:_collagenase-like_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 2.473
 

Sequence

CDS
ATGAAGGTCTTCGCAGCAGTATTGATGGCGTTGGCGGCCGTGGTCGTGGCAGAAGAGCCCATCGAACTCGACTACCACATCAAGATCGGTATCCCCGGGCCGAGAGTCTTAGACGCGCCGAGGAAGCCGCTGACTTCGACGGTACCAGGATTGTGGGTGGTTCTGCCGCCAACGCTGGTGCTCACCCCCATCTTGCTGGACTTGCTCGTCAGTTCACCCTCGCTCTTGGCACAGCTAACATCTTCTCCGGAGGCACCAGGGTCACACCTCCAATGTCAGATGCACGCAGCTACAACATGGACACCCTCCACAACGCGTCGCCATCATCAACCACAACCATGTTGGCTTCACCAACAACATCCAGCGCATCAACCTAGCCAGTGGAAGCAACAACTTTGCTGGTACTTGGGCCTGGGCTGCCGGCTTCGGAAGGACCTCCGATGCTGCTTCGGAGCCAACAACCAACAAAAACGCCAAGTGAGCCTCCAGGTCATTACCAACGCCGTCTGCGCCCGCACGTTTGGAAACAATGTGATCATTGCCTCCACCCTCTGTGTTGACGGCTCTAACGGTCGCAGCACCTGCAGCGGAGACTCCGGCGGCCTCTCACATCGGCAGCGCGGAAGCCGTCAACTGATCGGTATCACATCGTTCGGATCAGCTCAAGGTTGCCAGAGAGGCCACCCTGCCGGCTTCGCCAGAGTCACATCCTTCAACTCCTGGATCCGGGCTAGAATTTAA
Protein
MKVFAAVLMALAAVVVAEEPIELDYHIKIGIPGPRVLDAPRKPLTSTVPGLWVVLPPTLVLTPILLDLLVSSPSLLAQLTSSPEAPGSHLQCQMHAATTWTPSTTRRHHQPQPCWLHQQHPAHQPSQWKQQLCWYLGLGCRLRKDLRCCFGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGLSHRQRGSRQLIGITSFGSAQGCQRGHPAGFARVTSFNSWIRARI

Summary

Uniprot
ProteinModelPortal
PDB
2HLC     E-value=3.00529e-14,     Score=188

Ontologies

Topology

SignalP
Position:   1 - 17,         Likelihood:  0.979023
 
 
Length:
246
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.3149
Exp number, first 60 AAs:
1.96842
Total prob of N-in:
0.15954
outside
1  -  246
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 QLIGITSFGSAQGCQR 100.00 2e-04
28556443 QLIGITSFGSAQGCQR 100.00 2e-04
28556443 QLIGITSFGSAQGCQR 100.00 2e-04
28556443 QLIGITSFGSAQGCQR 100.00 2e-04
28556443 LAGLVIALTNGR 100.00 2e-04
28556443 QLIGITSFGSAQGCQR 100.00 2e-04
28556443 QLIGITSFGSAQGCQR 100.00 2e-04
28556443 QLIGITSFGSAQGCQR 100.00 2e-04
28556443 QFTLALGTANIFSGGTR 100.00 2e-04
28556443 QFTLALGTANIFSGGTR 100.00 2e-04
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QLIGITSFGSAQGCQR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QLIGITSFGSDR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QVSLQVITNAVCAR 100.00 0.013
28556443 QLIGITSFGSAQGCQR 100.00 0.013
28556443 QLIGITSFGSAQGCQR 100.00 0.013
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