SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16672
Pre Gene Modal
BGIBMGA010037
Annotation
PREDICTED:_uncharacterized_protein_LOC101746233_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 1.687
 

Sequence

CDS
ATGATTAAGACGTTGACTGCCATGATCACGAGTGACGATGTGACTGGCGGTCACACTATACGATCGACTAACGAGACAGCACGCGCCGCCGCCATGGAGAACATCATAGCTCTGGACTTCACCGAGTCTGCACCACTAAACTTCTCCCAGTTTGACTTCAGGGCATTGAATCAAACCAACATCACATCAAGCTCAAGTTACATCAGCAGACGGCAGTTATTTGGGATCGTCGTGAAGATCGTGTATGCTATAGGAATAATTGGGAACACTATAGCTATCATCGCTTTGAGGAGAGGAGAGAGGAGGGTCCGCAACAGAAAGCATTTGCTGCTGCTAACCTCGCTGGCGGCTAACGACGTCGTCGCCTTGGTAAGTATCGCTTCTTAG
Protein
MIKTLTAMITSDDVTGGHTIRSTNETARAAAMENIIALDFTESAPLNFSQFDFRALNQTNITSSSSYISRRQLFGIVVKIVYAIGIIGNTIAIIALRRGERRVRNRKHLLLLTSLAANDVVALVSIAS

Summary

Similarity
Belongs to the G-protein coupled receptor 1 family.
Pfam
PF00001   7tm_1
Interpro
IPR000276   GPCR_Rhodpsn        + More
IPR017452   GPCR_Rhodpsn_7TM       
IPR008365   Prostanoid_rcpt       

Ontologies

Topology

Length:
128
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
36.15203
Exp number, first 60 AAs:
0.04638
Total prob of N-in:
0.17005
outside
1  -  73
TMhelix
74  -  96
inside
97  -  107
TMhelix
108  -  127
outside
128  -  128
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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