Silkworm Genome Informatics Database

Gene

KWMTBOMO16667

Pre Gene Modal

BGIBMGA005944

Annotation

Serine/threonine-protein_phosphatase_1_regulatory_subunit_10?_partial_[Papilio_xuthus]

Location

Bomo_Scaf081(+):13496-14778 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.98

CDS

ATGGACGTTTCTGGGCCGCATACATTAACAGTTAATGGATTAAAAGGGGTTTTATGTTATCATAGAAAAAAAGGTCCCAAAAAGAACATTAAATGGAAACCTGACAGTGAACTAGAAACAATTCATGTATTTGACCTGGATGAGACTGAAAGAATAAATGTCACCAAAACATTCACGGATATGAAATATTTAGAAAGAATACACGAAAGGGAAGCTTTCGAAAAAGCAAGAAACCTTAGTAATGACGACGTTATGGAAGAACGTACAAATTGGAAGCCTTTGATTTTAGTAGATTTAGAAGGACAATTACAAGTAGATTATGGCAAAAACAGTAAAGAGAAAGATATACAGGCACTACGACAAAAAGTAACCTTACAACCTTTATATTTCAACAAGGCAATGATTCCTGATTCCCCAATTGAACCAGAATTAGAAACTCACACCTATTCTGAACCCTCAATAATTCCCTTGGAAGATGTCACTGGAAATCAAGATAATATAAGTGATTTTAGAAATATGCCTTGGCCTGAACCGAGAGGTAATGCTCCACCCCAAACACCGAGTAATATGACTGTTGGTGCTAGTCCATTATTCCCTAACAATCTCACACAATTTTCAAACACTTTTCCTAATACGCAATTTCCTGGAGTACCACCTGCCTTCCAAGGCCCTAACATCGTTCCTGGTGAGTGGCAAAATGGAATACCCCAACAGATGATACCAAATGGAATGCCTGGTCCAATAGGAACCCACAATTTAGCACCAGGTGTGATGCCTCCCGGAAGCCATCCACAAGGTATGATGATTTCACCTGAGACTATGATGATGGCTCCGGAGATGTTCGGAAACCCAACTCCAATGATTCCTGTACCACCGGAAAGTTTCAATATGCAACAGAATATGTATCCGATGGATTTCAACATGGTAGGTCCTCCGGGACCGGGCCCCGAAGGTTTTAATGGCCCTGGCCCTGGTTCTGGTCCCGGACCTGGTAATTTTAGAGGAGCCATGCGTGGTCGCGGTGTCAATGGTCATTGGCGCGGAAAGGGTGCGGGGAACTGGGAAAATCCGTCCAGGGGTGGTAGAGGAGGAGGCCCTCGCGGGAACCGAAAGACAATTTGTATGTATTTTCAAAGGAAGGGATCTTGTCGGCAGGGCGATAATTGTACATTCTTGCATCCAGGTGTGAACTGTCCTTTTTAA

Protein

MDVSGPHTLTVNGLKGVLCYHRKKGPKKNIKWKPDSELETIHVFDLDETERINVTKTFTDMKYLERIHEREAFEKARNLSNDDVMEERTNWKPLILVDLEGQLQVDYGKNSKEKDIQALRQKVTLQPLYFNKAMIPDSPIEPELETHTYSEPSIIPLEDVTGNQDNISDFRNMPWPEPRGNAPPQTPSNMTVGASPLFPNNLTQFSNTFPNTQFPGVPPAFQGPNIVPGEWQNGIPQQMIPNGMPGPIGTHNLAPGVMPPGSHPQGMMISPETMMMAPEMFGNPTPMIPVPPESFNMQQNMYPMDFNMVGPPGPGPEGFNGPGPGSGPGPGNFRGAMRGRGVNGHWRGKGAGNWENPSRGGRGGGPRGNRKTICMYFQRKGSCRQGDNCTFLHPGVNCPF

Uniprot

A0A2A4IWH9 A0A2A4IVM2 A0A2W1C1L1 A0A212F0Q9 A0A194PKC1 A0A194R3F5 + More
S4PBA7 A0A0L7K3D7 A0A2H1WG90 A0A2J7QNI1 A0A182X623 A0A1Y1K4G9 A0A1W4WEL1 A0A1B0CHK2 A0A139WGR0 D6WL76 A0A1A9XDR1 A0A1B0B4P0 A0A1A9VXN5 A0A1A9W0K9 A0A3B0K283

Pubmed

28756777 22118469 26354079 23622113 26227816 28004739 + More
18362917 19820115

EMBL

NWSH01005932 PCG63836.1 PCG63835.1 KZ149895 PZC78846.1 AGBW02011047 + More
OWR47313.1 KQ459601 KPI93886.1 KQ460870 KPJ11770.1 GAIX01004706 JAA87854.1 JTDY01012331 KOB52296.1 ODYU01008466 SOQ52099.1 NEVH01013194 PNF30147.1 GEZM01095777 JAV55358.1 AJWK01012442 KQ971343 KYB27180.1 EFA03494.1 JXJN01008377 OUUW01000004 SPP79111.1

Proteomes

UP000218220 UP000007151 UP000053268 UP000053240 UP000037510 UP000235965 + More
UP000076407 UP000192223 UP000092461 UP000007266 UP000092443 UP000092460 UP000078200 UP000091820 UP000268350

Pfam

PF18044   zf-CCCH_4        + More
PF08711   Med26
PF00642   zf-CCCH

Interpro

IPR017923   TFIIS_N        + More
IPR041367   Znf-CCCH_4
IPR036855   Znf_CCCH_sf
IPR000571   Znf_CCCH
IPR035441   TFIIS/LEDGF_dom_sf
IPR003617   TFIIS/CRSP70_N_sub

SUPFAM

SSF90229 SSF90229 + More
SSF47676 SSF47676

Gene 3D

1.20.930.10

ProteinModelPortal

A0A2A4IWH9 A0A2A4IVM2 A0A2W1C1L1 A0A212F0Q9 A0A194PKC1 A0A194R3F5 + More
S4PBA7 A0A0L7K3D7 A0A2H1WG90 A0A2J7QNI1 A0A182X623 A0A1Y1K4G9 A0A1W4WEL1 A0A1B0CHK2 A0A139WGR0 D6WL76 A0A1A9XDR1 A0A1B0B4P0 A0A1A9VXN5 A0A1A9W0K9 A0A3B0K283

KEGG

101738402 K17552 protein phosphatase 1 regulatory subunit 10 | (RefSeq) lisH domain-containing protein C1711.0

GO

GO:0046872 GO:0005634 GO:0006629 GO:0008081 GO:0006508 GO:0005975 GO:0046835 GO:0016773 GO:0006096 GO:0006281 GO:0006259

Subcellular location

Nucleus

Length:

400

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000950000000000001

Exp number, first 60 AAs:

0.00072

Total prob of N-in:

0.00363

outside

1 - 400

Pi

0.762704

Theta

0.828518

Tajima's D

-1.019205

CLR

0

CSRT

0.137793110344483

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree