SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16662
Pre Gene Modal
BGIBMGA014594
Annotation
PREDICTED:_uncharacterized_protein_LOC101738420_isoform_X1_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.004
 

Sequence

CDS
ATGGGCATTGTCCAACTTGACCTCCTGTCTCTAATTTCACTTGTGGGCATTCGCGAATACAAAACCTGTTTTTTTTATTCACAGGCCGATCCTAACTTTCACGGCGCTCAGAAAGAATCTGCCTGGAAAATGTCTGCCGATAAACCTGAACTAAGAGCACTTCTCTTGGAAGCTATCGCCTTCGAAGACGGCTTCGAGAATAATAGTGTGAAATCTGAACCCGATGACGAAATCAAGTCTGAACCTGATGACGAGATCAAGTCTGAACCCGAGGACGATTACGATTCAGCTGATGAAGGCGAGGAGACAAGTGGCAGCACGGCACTAGACGGCATGGGCCAGTACTTGGGCGAGGTGAGCTCGCTACTGGACCGGTCGGGCAGCTGGCAGGAGCTAGCGGGCAGGCTGCGGCTCGACTCGCTGCTCTCCCTGTACTGCGCGCAGCCCAGCCCCACGCACACGCTGCTGCTGCATCTCAAGGAATACAATGAAATATCATCGAAATCGTTAGCATTCATCCTAGAAGATATGGGAGAGTTGGAAGCGGCTGAAGTTATAAGAAGATACGTTGAATAA
Protein
MGIVQLDLLSLISLVGIREYKTCFFYSQADPNFHGAQKESAWKMSADKPELRALLLEAIAFEDGFENNSVKSEPDDEIKSEPDDEIKSEPEDDYDSADEGEETSGSTALDGMGQYLGEVSSLLDRSGSWQELAGRLRLDSLLSLYCAQPSPTHTLLLHLKEYNEISSKSLAFILEDMGELEAAEVIRRYVE

Summary

Pfam
PF00554   RHD_DNA_bind        + More
PF16179   RHD_dimer
PF12796   Ank_2
PF00023   Ank
Interpro
IPR011029   DEATH-like_dom_sf        + More
IPR032397   RHD_dimer       
IPR036770   Ankyrin_rpt-contain_sf       
IPR020683   Ankyrin_rpt-contain_dom       
IPR037059   RHD_DNA_bind_dom_sf       
IPR008967   p53-like_TF_DNA-bd       
IPR002110   Ankyrin_rpt       
IPR033926   IPT_NFkappaB       
IPR013783   Ig-like_fold       
IPR000451   NFkB/Dor       
IPR011539   RHD_DNA_bind_dom       
IPR014756   Ig_E-set       
IPR002909   IPT_dom       
SUPFAM
SSF47986   SSF47986        + More
SSF48403   SSF48403       
SSF49417   SSF49417       
SSF81296   SSF81296       
Gene 3D

Ontologies

Topology

Length:
191
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00282
Exp number, first 60 AAs:
0.00246
Total prob of N-in:
0.01836
outside
1  -  191
 
 

Population Genetic Test Statistics

Pi
11.729823
Theta
13.092568
Tajima's D
-0.310632
CLR
0
CSRT
0.289035548222589
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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