Gene

KWMTBOMO16658

Annotation

PREDICTED:_uncharacterized_protein_LOC106137189_isoform_X1_[Amyelois_transitella]

Location

Bomo_Scaf076(+):9976-15415      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.645

CDS

ATGGCTCCATTGTCCGACCTTCAAATAAAAATTAATACACTTAGAAGTCGTAAAGAACGATGTTTTAGACGTGTTCAACAATATTACGACCTAGCTAAAGCTGTGCAAAATAATACAGCAGAATTTAGTAGTTTGTCCGTGCGGGTCAGTGACCTCGAGTCCACTAGGGAATCTTTCGAAAAAATTGTTGATGAGATTTCAGTTTTGGAGTTAAAAAATGACCCTAATTATATCATCGGTAACCAAGAGGTACATGCCCTTGATGACCTCTATTTTGAGATTTTACGTATTTTTCAAGAACATGATTCGCGTTCGAAGTCATCGAAACAGGAAAACAAAGGCGCATCGGAGCGCGGCGCTCAGCCTCGTTTGCCTAAAATCGAATTGGTTCATTTCGACGGTAGATTAGAAAATTGGATCACATTTCGTGATACTTTTTCCAGCTTAATTCATACCAATACAAGTTTAGGTGATATTGATAAATTCTATTACCTATTGTCAGTCGTAACTGGCCCTGCGCTTCAAATTGTTAAAAGTCTGCCGATATCAAACGACAATTATAATATAGTATGGACTAGCTTATGTGACAGATACGAAAATAAGCGTGCCATAGCTACGCGCTATATGGATAAGTTGTTTGCGTTCAAGCCGTTGTCTAACGAATCCGTGAACGGATTAAATTCCTTTTTGGAAACGTTTCAAGAGTGTGTTCAAGCCCTTGAGTTATTAGAAATTGGTAACTTAGCGGGATTTATTTTATGTTATATCGGATTGCGTAATATAGACCAGGTTTCAAGGCGTGAATTCGAACAAAAAATAGGTACAAACGAAATACCTGTTATCAAAACATTGATCGATTTTGTCACAAACCAGACCCGAATATTGGAAATGTCAATGAACACAAGTACTTTCTCGAAGCCGAGTACTAGTAAAACTTTTACTCCTTCGATTCAAAATAAATCCATTAGTAAGCCTACCACTAAAAATACAAATTTAAAAACTTGTTTAGCAAGTAGTACGAGCGCTGATAAGGTTGATTACGCAAAAAAGGGATGTTTGTACTGCAATAAACCCTTTCATTCAATTTATAAATGTTTCGAGTATATCGCACTAACACCTGTACAGCGCATTGATAAAATTAAAGAGTTGCATTTGTGCGAGAACTGTCTCCGTCAAGGTCACGCGTCTAATGAGTGCCCGTCGAAGATAACATGTACGGTGTGTAAAAACAGGCATCACCACACGTTGCATGTTGATTCTAAAACAAGTACAATTAATTCGGATTTTAATAATTCTTGCAACGATAATTTTAATAATAATAACGAAGATCGAGTCTCGTTGACGTGTTCGACTGGATCTACAGTCATGTTGGGCACTGCGATTATACACGTATTGGACGTTTTAGGCAAATATCAACCCGTACGAGTAGTAATTGACAGTGGATCCCAATCTAGTTTTTTGACGAATGATTGTGCACAACGACTAGGTCTCCCACGCCAAAAGTGTAACACACAACTGATAGGTTTAGGCGGAGCGGTAGTTCGTGATCACGGCATGGTTTTATGCAAAATCAAACCAACCACGTCCGATAATCCGATATTCAATTTAAAAACGGTTGTGGTTTCAAAAATTTCTGGTGATATGCCTTCGGTTAACTTTACAGAGAATTTAAAACTCGAATATAAAAACTTGTTGTTGGCTGACCCTACTTTCTATCGTTCGAGTCGCATTGATATGTTGCTCGGCAGCGACGTATTTCCGTTTATTTATGACGGTGGAAGGTATAGTCCGTCGCGGCAAGGATTACCGTTGGCGTTAAGTAGTGTATTTGGTTACGTAATTACGGGTCAGCTGTCTTGCAATAATACGAGTAACACTAGAAATGTATCAATGTGCATGTTAAGCAGCGAATCAAAAGTCGATGACTTAATTAAATCGTTTTGGGAAACAGAAAGCTTGGTCGCTGATTTGCCCAAAAACCCGGATGACGTCATCACTGAACAGATGTTTGTAAATGATTATAAGCGTGATAGTGCAGGTCGATACATTGTTAAATACCCGTTTAAGCCTGACTCTGAACTGGGAAACTCAAGGCAAATTGCGATAAAAAGATATCAAAATTTAGAACGTAAACTGTCGCGTTTACCAGACCTACGGAAGGAATATAAAAAATTTATGGATGAGTACGCTTCGCTCGGTCATATGATTTGTGTCGGCGAGGTATCAGAAGTGGAATCAGGGTACGTCATTCCCCACCACTGCGTACATAAGCCTGACAGCAGTAGGTGGGACGACACTCTTCCAAAGTTGTTACTCGATGAATGGTCAATGTTTTCATCTCAAATACCGTTGTTATCGAAACTAAAACACGACCGGCATGTCTTTGTCCAAAACCATACGGTCTCTCAAGTGGTAGGGTTTTGTGACGCGTCAACGGCTGGATTCGCCGCCGTCGTGTATATTCGCAGTCAAGACGTGCAAGGTAACGTTAACGTTAGCTTACTGTTATCGAAATCTAAGGTCGCGCCCTTAAAAACAGTATCAATTCCACGTCTTGAATTAATGGCTGCTCACTTATTGTCAAAAACTTTACGGTACGTAATCGATATTTTGGCCAAGGAAGTAGAAATTGGTGAGCAACGTCAAAAGTGGTACGTTGATGCTCCTAATCTATCTATAAATGACCTGGTACTGATTCACAATGATAATGCCCCTTGTCAACAATGGAGCTTAGGACGTGTAGAACAGGTTCATCCCGGACTTGATGGGAGGGTTCGCGTTGTTACGGTTCGGACGCAAAACTCGAAGCTAAAGCGCCCTGTCACAAAACTGAGTCCTCTCCCTAAAGAGTAG

Protein

MAPLSDLQIKINTLRSRKERCFRRVQQYYDLAKAVQNNTAEFSSLSVRVSDLESTRESFEKIVDEISVLELKNDPNYIIGNQEVHALDDLYFEILRIFQEHDSRSKSSKQENKGASERGAQPRLPKIELVHFDGRLENWITFRDTFSSLIHTNTSLGDIDKFYYLLSVVTGPALQIVKSLPISNDNYNIVWTSLCDRYENKRAIATRYMDKLFAFKPLSNESVNGLNSFLETFQECVQALELLEIGNLAGFILCYIGLRNIDQVSRREFEQKIGTNEIPVIKTLIDFVTNQTRILEMSMNTSTFSKPSTSKTFTPSIQNKSISKPTTKNTNLKTCLASSTSADKVDYAKKGCLYCNKPFHSIYKCFEYIALTPVQRIDKIKELHLCENCLRQGHASNECPSKITCTVCKNRHHHTLHVDSKTSTINSDFNNSCNDNFNNNNEDRVSLTCSTGSTVMLGTAIIHVLDVLGKYQPVRVVIDSGSQSSFLTNDCAQRLGLPRQKCNTQLIGLGGAVVRDHGMVLCKIKPTTSDNPIFNLKTVVVSKISGDMPSVNFTENLKLEYKNLLLADPTFYRSSRIDMLLGSDVFPFIYDGGRYSPSRQGLPLALSSVFGYVITGQLSCNNTSNTRNVSMCMLSSESKVDDLIKSFWETESLVADLPKNPDDVITEQMFVNDYKRDSAGRYIVKYPFKPDSELGNSRQIAIKRYQNLERKLSRLPDLRKEYKKFMDEYASLGHMICVGEVSEVESGYVIPHHCVHKPDSSRWDDTLPKLLLDEWSMFSSQIPLLSKLKHDRHVFVQNHTVSQVVGFCDASTAGFAAVVYIRSQDVQGNVNVSLLLSKSKVAPLKTVSIPRLELMAAHLLSKTLRYVIDILAKEVEIGEQRQKWYVDAPNLSINDLVLIHNDNAPCQQWSLGRVEQVHPGLDGRVRVVTVRTQNSKLKRPVTKLSPLPKE

Uniprot

X1X7E1   A0A2S2NZ22   J9JL40   J9K351   A0A2S2PLW6   X1XU04   + More
A0A3Q0JC76   A0A3Q0JHJ6   X1XDR2   A0A2S2P1X6   A0A2S2QDN7   J9JVZ7   X1WZF3   A0A0A9ZHU0   J9L9H5   X1WQX8   A0A2S2P2U4   X1WTX8   A0A023F0C4   A0A023EYR9   A0A0A9X8U7   J9M7R2   A0A1Y1KV73   A0A2S2NPW7   X1XET3   A0A2S2NDE3   A0A146KRI6   X1WVF9   X1X3D9   A0A0A9WEJ9   A0A0A9WH19   A0A146L5E8   A0A2S2PI15   A0A2S2NNC8   A0A1Y1LIC8   A0A2S2R014   J9K0A1   A0A0A9WW84   A0A0J7KDN6   J9JKU0   A0A0A9YZM3   A0A146L3Y2   A0A2S2QRP8   X1XU26   A0A224XGH3   A0A1S3CUQ4   A0A3Q0IQQ3   X1X096   X1WY95   A0A1B6MIG8   A0A2S2NBR8   A0A0A9YU87   A0A0A9YQQ8   A0A1S3DBK1   A0A023F0E2   X1WYQ8   A0A087T9T6   A0A151JF33   A0A226EM86   A0A226E0X4   A0A226EUK6   A0A224XG39   A0A2S2PTX9  

Pubmed

25401762    25474469    28004739    26823975   

EMBL

ABLF02018732    ABLF02018734    GGMR01009860    MBY22479.1    ABLF02018737    ABLF02025193    + More
GGMR01017784    MBY30403.1    ABLF02028417    ABLF02042407    ABLF02009462    ABLF02065929    GGMR01010723    MBY23342.1    GGMS01006636    MBY75839.1    ABLF02015138    ABLF02041614    GBHO01000061    JAG43543.1    ABLF02008636    ABLF02065931    ABLF02002658    ABLF02034765    ABLF02042453    GGMR01011131    MBY23750.1    ABLF02054908    GBBI01004408    JAC14304.1    GBBI01004410    JAC14302.1    GBHO01028371    GBHO01028370    JAG15233.1    JAG15234.1    ABLF02005251    ABLF02055296    GEZM01078370    GEZM01078366    GEZM01078363    JAV62757.1    GGMR01006575    MBY19194.1    ABLF02041762    GGMR01002187    MBY14806.1    GDHC01019528    JAP99100.1    ABLF02026240    ABLF02055027    ABLF02043036    GBHO01037783    JAG05821.1    GBHO01037781    JAG05823.1    GDHC01016272    JAQ02357.1    GGMR01016460    MBY29079.1    GGMR01005823    MBY18442.1    GEZM01054789    JAV73399.1    GGMS01014133    MBY83336.1    ABLF02067195    GBHO01031928    GBHO01031926    JAG11676.1    JAG11678.1    LBMM01009202    KMQ88311.1    ABLF02021785    GBHO01007061    JAG36543.1    GDHC01016727    JAQ01902.1    GGMS01010599    MBY79802.1    ABLF02001506    ABLF02008029    ABLF02035899    ABLF02037719    ABLF02046327    ABLF02064627    GFTR01008866    JAW07560.1    ABLF02008032    ABLF02035293    ABLF02060940    ABLF02030854    ABLF02067347    GEBQ01004229    JAT35748.1    GGMR01002024    MBY14643.1    GBHO01008418    GBHO01008416    JAG35186.1    JAG35188.1    GBHO01009080    JAG34524.1    GBBI01004318    JAC14394.1    ABLF02028666    ABLF02066713    KK114194    KFM61875.1    KQ979016    KYN24380.1    LNIX01000003    OXA58579.1    LNIX01000007    OXA51382.1    LNIX01000001    OXA61293.1    GFTR01008874    JAW07552.1    GGMR01020322    MBY32941.1   

Proteomes

UP000007819    UP000079169    UP000036403    UP000054359    UP000078492    UP000198287    + More

Pfam

PF03564   DUF1759        + More
PF05585   DUF1758
PF17921   Integrase_H2C2
PF18701   DUF5641
PF05380   Peptidase_A17
PF00078   RVT_1
PF09337   zf-H2C2
PF00665   rve
PF17919   RT_RNaseH_2
PF17917   RT_RNaseH
PF02145   Rap_GAP

Interpro

IPR005312   DUF1759        + More
IPR021109   Peptidase_aspartic_dom_sf       
IPR008737   Peptidase_asp_put       
IPR001969   Aspartic_peptidase_AS       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR040676   DUF5641       
IPR008042   Retrotrans_Pao       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR000477   RT_dom       
IPR001878   Znf_CCHC       
IPR015416   Znf_H2C2_histone_UAS-bd       
IPR041373   RT_RNaseH       
IPR041577   RT_RNaseH_2       
IPR000331   Rap_GAP_dom       
IPR035974   Rap/Ran-GAP_sf       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       
SSF111347   SSF111347       

Gene 3D

2.40.70.10     3.30.420.10     3.40.50.11210    

ProteinModelPortal

X1X7E1   A0A2S2NZ22   J9JL40   J9K351   A0A2S2PLW6   X1XU04   + More
A0A3Q0JC76   A0A3Q0JHJ6   X1XDR2   A0A2S2P1X6   A0A2S2QDN7   J9JVZ7   X1WZF3   A0A0A9ZHU0   J9L9H5   X1WQX8   A0A2S2P2U4   X1WTX8   A0A023F0C4   A0A023EYR9   A0A0A9X8U7   J9M7R2   A0A1Y1KV73   A0A2S2NPW7   X1XET3   A0A2S2NDE3   A0A146KRI6   X1WVF9   X1X3D9   A0A0A9WEJ9   A0A0A9WH19   A0A146L5E8   A0A2S2PI15   A0A2S2NNC8   A0A1Y1LIC8   A0A2S2R014   J9K0A1   A0A0A9WW84   A0A0J7KDN6   J9JKU0   A0A0A9YZM3   A0A146L3Y2   A0A2S2QRP8   X1XU26   A0A224XGH3   A0A1S3CUQ4   A0A3Q0IQQ3   X1X096   X1WY95   A0A1B6MIG8   A0A2S2NBR8   A0A0A9YU87   A0A0A9YQQ8   A0A1S3DBK1   A0A023F0E2   X1WYQ8   A0A087T9T6   A0A151JF33   A0A226EM86   A0A226E0X4   A0A226EUK6   A0A224XG39   A0A2S2PTX9  

KEGG

NA   

GO

GO:0004190   GO:0003676   GO:0015074   GO:0008270   GO:0051056   GO:0005096   GO:0005634   GO:0005975   GO:0046835   GO:0016773   GO:0006096   GO:0006281   GO:0006259  

Length:

950

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.09904

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00051

outside

1  -  950

 

 

Pi

14.35704

Theta

15.739018

Tajima's D

-0.701984

CLR

0

CSRT

0.197390130493475

Interpretation

Uncertain