SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16656
Pre Gene Modal
BGIBMGA004632
Annotation
PREDICTED:_transcription_factor_EB_[Papilio_polytes]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.229
 

Sequence

CDS
ATGAAAGCAGCGGCACTCACTAACTCTCTTCCTAGAAGACATACTATCCCTGGACAGCGGCGCCGGACCCCTGTCATCGTCGGGCCCCCCTCGGCCGCCAGTTCCGTGGCAGGGGACTGCGCGATGCTCTCCGATGCGGACATGCACGCGCTCGCTAAAGACAGACAGAAAAAAGACAATCACAACATGATCGAGCGCCGTCGGAGGTTCAATATAAACGACCGGATAAAGGAGCTTGGTACGTTGCTGGCGAAGACGAATGACCCCTTCTACGAAGTGATCCGTGACGTGAGCCGAACAAGGGAACCATACTCAAGAGCAGCGTCGACTACATCAAGTGCCTGCGAGACGAGGTCAACAGGCTCAAGCAGAGCGAGCAGCGGCGGAAGCAGATCGAACTCCACAACCGGAAGCTGA
Protein
MKAAALTNSLPRRHTIPGQRRRTPVIVGPPSAASSVAGDCAMLSDADMHALAKDRQKKDNHNMIERRRRFNINDRIKELGTLLAKTNDPFYEVIRDVSRTREPYSRAASTTSSACETRSTGSSRASSGGSRSNSTTGS

Summary

Uniprot
Pfam
PF00010   HLH
Interpro
IPR011598   bHLH_dom        + More
IPR036638   HLH_DNA-bd_sf       
SUPFAM
SSF47459   SSF47459       
Gene 3D
ProteinModelPortal
PDB
6G1L     E-value=2.30217e-13,     Score=176

Ontologies

Topology

Length:
138
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00937
Exp number, first 60 AAs:
0.00937
Total prob of N-in:
0.17608
outside
1  -  138
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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