Gene

KWMTBOMO16648

Annotation

pol_polyprotein_[Bombyx_mori]

Location

Bomo_Scaf068(+):14716-15294      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.217

CDS

ATGTTTGGTTTACGCGCGTCCGTGCGCACTGATAGCGGAGTCAGTGCAGCACAGTTAACCTACGGTAAAAATATACGTTTACCTGGAGATTTTTACGATGTCAGTAAGGAGGAAAATTTATGCGAGCCACTTAGCTTAGTAAACAAAATACAAAAAATTATTAAAAGTTTTCGTCCAGTAAGAGAAAACCAAACCTCGCGATCAATTTTTGTACATCCAGACCTACATAAATGTAGTTTTGTTTTCGTTCGAGACGATGCAGTTCATAAGTCGCTTAAACCGCCTTACGATGGCCCTTTTAGAGTTATTGAAAGAGGACCGAAAGTTTTCTTAGTGCAATTATTTGGCCGTCAAGCTCGTATATCGGTTGATAGGTTAAAACCTGCTTACGTCCTCAAAGAAAATAATAATGATAATACGATTATATTAGATAATGATGTAACGCGTGTTCCGAGGCCCAACATTTTACCACCTAAACACTTTGTGACTAGAAGTGGACGCGTAATTAAACAGCCTTTAAGATTTTTAGACTAG

Protein

MFGLRASVRTDSGVSAAQLTYGKNIRLPGDFYDVSKEENLCEPLSLVNKIQKIIKSFRPVRENQTSRSIFVHPDLHKCSFVFVRDDAVHKSLKPPYDGPFRVIERGPKVFLVQLFGRQARISVDRLKPAYVLKENNNDNTIILDNDVTRVPRPNILPPKHFVTRSGRVIKQPLRFLD

Uniprot

Q9NL36   A0A2W1BCF4   A0A154PRN5   A0A0L7LKK2   A0A0A9YF71   A0A0K8SIM9   + More
W4XUK1   W4YUC1   A0A0A9ZCQ0   W4YMV4   A0A0A9Z755   W4YJC9   A0A2L2YRB9   A0A085LV54   A0A2W1BSZ0   A0A151IZ86   A0A154PPM0   A0A0P4VHP4   A0A182H519   W4YMV3   A0A1Y1LQX1   A0A0B1PQL7   A0A0A9W8E2   A0A087T819   A0A085LSZ5   A0A2G8KE42   A0A0K8T741   A0A182H637   A0A085N9V1   A0A0A9YH88   A0A0L7QJ10   A0A146KW59   W4XB88   A0A0S4T803   A0A0N5DH86   A0A2W1BS51   A0A146M8V0   G7YQF5   A0A085MW63   A0A0J7JXC2   A0A154P891   A0A146LW48   A0A085LPA5   A0A0J7JX15   A0A0L7GVJ5   A0A2L2YVP0   A0A0J7K815   W4XB89   A0A087TS24   A0A0L7QJ52   A0A147BKI1   Q5C300   A0A2M4BVJ0   W4Y2D0   A0A2L2YKV1   A0A2M4BUG8   A0A0B1PKI0   A0A2G8LIN8   A0A0B1PEN6   A0A0J7K7X5   W4Y2C7   A0A182H7S1   L7LZ63   A0A182W698   A0A0L7QQ06   W4YYU0   A0A182G8J3   A0A2J7QH64   A0A068XAH4   A0A183NCI2   A0A0L7QJU2   A0A151JC90   A0A085N387   D7ELG0   A0A2L2YQU8   A0A068XQZ5   A0A2J7QUR3   D6WTN9   A0A0J7K034   A0A0A9Y7K2   A0A085LME6   A0A0K8SWQ4   V5GGL4   A0A0A9X5K9   A0A0N5E2N5   A0A151JZY3   A0A182G2H7   A0A183MCV1   A0A182H1T7   C7C1Z7   A0A085LMX5   A0A0J7K7H4   A0A085N4L5   A0A2J7QNV1   A0A154NWK6   A0A182GDC4  

Pubmed

10954076    28756777    26227816    25401762    26561354    24929829    + More
27129103    26483478    28004739    29023486    26823975    22023798    29652888    16617374    25576852    18362917    19820115   

EMBL

AB032718    BAA92690.1    KZ150527    PZC70600.1    KQ435072    KZC14397.1    + More
JTDY01000729    KOB76083.1    GBHO01013841    JAG29763.1    GBRD01012847    JAG52979.1    AAGJ04101971    AAGJ04172791    GBHO01000562    JAG43042.1    AAGJ04032598    GBHO01019348    GBHO01003868    GBHO01000563    GBHO01000561    JAG24256.1    JAG39736.1    JAG43041.1    JAG43043.1    AAGJ04110531    IAAA01041607    LAA10577.1    KL363282    KFD48850.1    KZ150024    PZC74843.1    KQ980726    KYN14010.1    KQ434993    KZC13198.1    GDKW01003376    JAI53219.1    JXUM01042314    JXUM01111110    KQ565471    KQ561319    KXJ70932.1    KXJ78999.1    GEZM01052715    JAV74305.1    KN538403    KHJ42472.1    GBHO01040831    JAG02773.1    KK113883    KFM61258.1    KL363304    KFD48091.1    MRZV01000655    PIK46271.1    GBRD01004464    JAG61357.1    JXUM01113296    KQ565677    KXJ70787.1    KL367526    KFD66247.1    GBHO01011167    GBHO01011165    GBHO01011164    JAG32437.1    JAG32439.1    JAG32440.1    LHQN01021927    KOC58627.1    GDHC01018540    JAQ00089.1    AAGJ04001742    KZ149973    PZC76007.1    GDHC01002934    JAQ15695.1    DF143974    GAA55185.1    KL367622    KFD61459.1    LBMM01024564    KMQ82556.1    KQ434841    KZC08087.1    GDHC01006756    JAQ11873.1    KL363353    KFD46801.1    LBMM01025225    KMQ82461.1    JTDY01023997    KOB12669.1    IAAA01055399    LAA11510.1    LBMM01012075    KMQ86424.1    KK116495    KFM67913.1    LHQN01025379    KOC58658.1    GEGO01004569    JAR90835.1    AY810086    AAX25975.2    GGFJ01007871    MBW57012.1    AAGJ04130731    IAAA01038888    LAA08744.1    GGFJ01007450    MBW56591.1    KN538444    KHJ40290.1    MRZV01000065    PIK60123.1    KN538457    KHJ40029.1    LBMM01012160    KMQ86374.1    JXUM01116862    KQ566027    KXJ70447.1    GACK01008900    JAA56134.1    KQ414796    KOC60712.1    AAGJ04156455    JXUM01047822    KQ561534    KXJ78240.1    NEVH01014357    PNF27920.1    UZAI01022325    VDP57734.1    KQ415050    KOC58849.1    KQ979064    KYN23150.1    KL367564    KFD63933.1    DS497852    EFA12072.1    IAAA01040175    LAA10459.1    NEVH01010489    PNF32322.1    KQ971355    EFA07205.2    LBMM01018891    KMQ83669.1    GBHO01015475    JAG28129.1    KL363391    KFD46142.1    GBRD01008235    JAG57586.1    GALX01005352    JAB63114.1    GBHO01028340    JAG15264.1    KQ981301    KYN43042.1    JXUM01002161    JXUM01139188    KQ568858    KXJ68859.1    UZAI01011555    VDP09045.1    JXUM01003682    KQ560162    KXJ84088.1    FN356212    CAX83701.1    KL363378    KFD46321.1    LBMM01012479    KMQ86204.1    KL367556    KFD64411.1    NEVH01012562    PNF30270.1    KQ434774    KZC04027.1    JXUM01009871    KQ560294    KXJ83212.1   

Proteomes

UP000076502    UP000037510    UP000007110    UP000078492    UP000069940    UP000249989    + More
UP000054359    UP000230750    UP000053825    UP000046395    UP000036403    UP000075920    UP000235965    UP000050790    UP000277204    UP000007266    UP000078541   

PRIDE

Q9NL36    L7LZ63   

Pfam

PF00665   rve        + More
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF17917   RT_RNaseH

Interpro

IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR021109   Peptidase_aspartic_dom_sf       
IPR034132   RP_Saci-like       
IPR000477   RT_dom       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR041373   RT_RNaseH       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       

Gene 3D

3.30.420.10     2.40.70.10    

CDD

cd06094  RP_Saci_like

ProteinModelPortal

Q9NL36   A0A2W1BCF4   A0A154PRN5   A0A0L7LKK2   A0A0A9YF71   A0A0K8SIM9   + More
W4XUK1   W4YUC1   A0A0A9ZCQ0   W4YMV4   A0A0A9Z755   W4YJC9   A0A2L2YRB9   A0A085LV54   A0A2W1BSZ0   A0A151IZ86   A0A154PPM0   A0A0P4VHP4   A0A182H519   W4YMV3   A0A1Y1LQX1   A0A0B1PQL7   A0A0A9W8E2   A0A087T819   A0A085LSZ5   A0A2G8KE42   A0A0K8T741   A0A182H637   A0A085N9V1   A0A0A9YH88   A0A0L7QJ10   A0A146KW59   W4XB88   A0A0S4T803   A0A0N5DH86   A0A2W1BS51   A0A146M8V0   G7YQF5   A0A085MW63   A0A0J7JXC2   A0A154P891   A0A146LW48   A0A085LPA5   A0A0J7JX15   A0A0L7GVJ5   A0A2L2YVP0   A0A0J7K815   W4XB89   A0A087TS24   A0A0L7QJ52   A0A147BKI1   Q5C300   A0A2M4BVJ0   W4Y2D0   A0A2L2YKV1   A0A2M4BUG8   A0A0B1PKI0   A0A2G8LIN8   A0A0B1PEN6   A0A0J7K7X5   W4Y2C7   A0A182H7S1   L7LZ63   A0A182W698   A0A0L7QQ06   W4YYU0   A0A182G8J3   A0A2J7QH64   A0A068XAH4   A0A183NCI2   A0A0L7QJU2   A0A151JC90   A0A085N387   D7ELG0   A0A2L2YQU8   A0A068XQZ5   A0A2J7QUR3   D6WTN9   A0A0J7K034   A0A0A9Y7K2   A0A085LME6   A0A0K8SWQ4   V5GGL4   A0A0A9X5K9   A0A0N5E2N5   A0A151JZY3   A0A182G2H7   A0A183MCV1   A0A182H1T7   C7C1Z7   A0A085LMX5   A0A0J7K7H4   A0A085N4L5   A0A2J7QNV1   A0A154NWK6   A0A182GDC4  

KEGG

NA   

GO

GO:0003676   GO:0015074   GO:0016021   GO:0005634   GO:0004190   GO:0003964  

Length:

177

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.10468

outside

1  -  177

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain