Gene

KWMTBOMO16639  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004573

Annotation

PREDICTED:_probable_small_nuclear_ribonucleoprotein_G_[Plutella_xylostella]

Location

Bomo_Scaf061(-):21858-23825      View in EpiBrowser

Full name

Small nuclear ribonucleoprotein G       + More
Probable small nuclear ribonucleoprotein G      

Alternative Name

Sm protein G

Location in the cell

Nuclear   Reliability : 1.983

CDS

ATGTCAAAAGCACATCCACCAGAATTGAAAAAATTCATGGACAAAAAATTGTCAATAAAGCTGAATGCGGGTCGCGCTGTTACCGGTGTGTTGCGCGGTTTTGATCCATTCATGAATTTAGTTCTTGATGAATCAGTCGAGGAGTGTAAAGACGGTCAGCGTAACAATGTTGGGATGGTGGTAATTCGTGGTAACAGTATTATAATGCTGGAATCTTTAGACAGACTTTAG

Protein

MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLDRL

Description

Plays role in pre-mRNA splicing as core component of the SMN-Sm complex that mediates spliceosomal snRNP assembly (PubMed:18621711). Plays role in pre-mRNA splicing as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome (By similarity).
Plays role in pre-mRNA splicing as core component of the SMN-Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing.

Subunit

Interacts with the SMN complex (PubMed:18621711). Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Most spliceosomal snRNPs contain a common set of Sm proteins, SNRPB, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF and SNRPG that assemble in a heptameric protein ring on the Sm site of the small nuclear RNA to form the core snRNP. Component of the U1 snRNP. Component of the U4/U6-U5 tri-snRNP complex. Component of the U7 snRNP complex. Component of the U11/U12 snRNPs that are part of the U12-type spliceosome (By similarity).

Similarity

Belongs to the snRNP Sm proteins family.

Keywords

Complete proteome   Cytoplasm   mRNA processing   mRNA splicing   Nucleus   Reference proteome   Ribonucleoprotein   RNA-binding   Spliceosome  

Feature

chain  Probable small nuclear ribonucleoprotein G

Uniprot

H9J4Y3   Q1HQ15   S4PGP0   A0A212F3N4   A0A2W1BMX0   A0A2A4KBB8   + More
A0A2H1X0T2   E2B420   A0A226EIU5   A0A194QQ03   A0A1W4X4T0   A0A232F0W0   K7J8R5   A0A182IRN9   J3JZA2   Q56FI6   A0A182XAE8   A0A1Q3F0J4   A0A182Y412   A0A182M220   A0A182QSQ0   A0A182UQA8   A0A182NR59   B0W6T2   A0A182VZV2   A0A182TEM8   Q7QCM2   A0A182RTI7   A0A182HS87   A0A2M4AYN0   W5JQP2   A0A182FPH7   A0A2M4C589   A0A2A3ECH3   A0A088AF01   A0A182S7C0   E9ICB7   E2AS58   D6X2J3   A0A182PL54   A0A182K3E1   Q16XZ1   A0A023EDW5   A0A154PSX1   A0A0L7QKV5   A0A0M8ZRW4   F4X4B6   A0A158P3I9   A0A026W947   A0A0L7KIE3   T1H614   A0A1B0CN65   A0A067R1E0   E0VUZ1   A0A1W4V6C3   B4PXV5   B3MRC4   B3NVJ9   A0A1L8DGW6   A0A2P8YLF4   A0A1B0FJA6   A0A1I8M8R6   A0A1B0ALV8   A0A1I8PB85   A0A0L0CFR4   A0A1L8EI25   A0A212EMZ2   A0A1S3J1B5   B4R5V5   A0A1B2AJF9   B4IEQ4   Q9VXE0   U5EXK0   H3BEQ0   A0A3B0JCX6   B5DW06   B4G365   B4MAP8   B4L7Y5   A0A162QM09   E9H7R1   A0A0M5JB08   B4JK85   A0A336LZY7   B4NEV7   R7UTD8   A0A2U4BYH4   A0A2R8N006   A0A151P5Y4   A0A1U7S845   A0A0P6JIP8   I3MC06   A0A1U7QNB4   A0A286XV88   A0A091DE93   B5DEP7   A0A2K6M6R3   A0A384CUM2   L5KT73   A0A2K5WTS0  

Pubmed

19121390    23622113    22118469    28756777    20798317    26354079    + More
28648823    20075255    22516182    23537049    25244985    12364791    14747013    17210077    20920257    23761445    21282665    18362917    19820115    17510324    24945155    26483478    21719571    21347285    24508170    30249741    26227816    24845553    20566863    17994087    17550304    29403074    25315136    26108605    10731132    12537572    12537569    10908584    18621711    9215903    15632085    21292972    23254933    22293439    21993624    15489334    15057822    15632090    24813606    23258410   

EMBL

BABH01025664    DQ443237    ABF51326.1    GAIX01006125    JAA86435.1    AGBW02010527    + More
OWR48341.1    KZ150133    PZC73033.1    NWSH01000008    PCG80962.1    ODYU01012560    SOQ58955.1    GL445463    EFN89534.1    LNIX01000003    OXA56934.1    KQ458671    KPJ05586.1    NNAY01001404    OXU24087.1    APGK01050286    BT128583    KB741169    KB632294    AEE63540.1    ENN73310.1    ERL91667.1    AY961514    AAX62416.1    GFDL01013981    JAV21064.1    AXCM01000657    AXCN02001472    DS231849    EDS36913.1    AAAB01008859    EAA07689.2    APCN01000254    GGFK01012582    MBW45903.1    ADMH02000776    ETN65074.1    GGFJ01011329    MBW60470.1    KZ288287    PBC29437.1    GL762231    EFZ21774.1    GL442221    EFN63758.1    KQ971372    EFA09436.1    CH477529    EAT39487.1    JXUM01098402    GAPW01006794    GAPW01006793    KQ564417    JAC06804.1    KXJ72321.1    KQ435180    KZC15016.1    KQ414940    KOC59224.1    KQ435879    KOX69865.1    GL888633    EGI58712.1    ADTU01008099    KK107323    QOIP01000002    EZA52580.1    RLU25776.1    JTDY01009742    KOB62850.1    AJWK01019865    KK852781    KDR16631.1    DS235797    EEB17197.1    CM000162    EDX01941.1    CH902622    EDV34329.2    CH954180    EDV46391.1    GFDF01008459    JAV05625.1    PYGN01000512    PSN45044.1    CCAG010019526    JXJN01000167    JRES01000455    KNC31047.1    GFDG01000495    JAV18304.1    AGBW02013765    OWR42848.1    CM000366    EDX18105.1    KX531270    ANY27080.1    CH480832    EDW46158.1    AE014298    AY070698    AY113538    AAL48169.1    GANO01000914    JAB58957.1    AFYH01012359    AFYH01012360    OUUW01000005    SPP80234.1    CM000070    EDY68092.1    CH479179    EDW24260.1    CH940655    EDW66307.1    CH933814    EDW05560.1    LRGB01000311    KZS19790.1    GL732601    EFX72260.1    CP012528    ALC49974.1    CH916370    EDV99987.1    UFQS01000372    UFQT01000372    SSX03280.1    SSX23646.1    CH964239    EDW82276.1    AMQN01006382    KB298218    ELU09428.1    AKHW03000870    KYO44135.1    GEBF01000214    JAO03419.1    AGTP01023909    AGTP01023910    AAKN02036901    KN124472    KFO21111.1    AABR07002993    AABR07073038    BC168750    CH473957    AAI68750.1    EDL91228.1    KB030567    ELK14622.1    AQIA01017680    AQIA01017681   

Proteomes

UP000005204    UP000007151    UP000218220    UP000008237    UP000198287    UP000053268    + More
UP000192223    UP000215335    UP000002358    UP000075880    UP000019118    UP000030742    UP000076407    UP000076408    UP000075883    UP000075886    UP000075903    UP000075884    UP000002320    UP000075920    UP000075902    UP000007062    UP000075900    UP000075840    UP000000673    UP000069272    UP000242457    UP000005203    UP000075901    UP000000311    UP000007266    UP000075885    UP000075881    UP000008820    UP000069940    UP000249989    UP000076502    UP000053825    UP000053105    UP000007755    UP000005205    UP000053097    UP000279307    UP000037510    UP000015102    UP000092461    UP000027135    UP000009046    UP000192221    UP000002282    UP000007801    UP000008711    UP000245037    UP000092444    UP000095301    UP000092460    UP000095300    UP000037069    UP000085678    UP000000304    UP000001292    UP000000803    UP000008672    UP000268350    UP000001819    UP000008744    UP000008792    UP000009192    UP000076858    UP000000305    UP000092553    UP000001070    UP000007798    UP000014760    UP000245320    UP000008225    UP000050525    UP000189705    UP000005215    UP000189706    UP000005447    UP000028990    UP000002494    UP000233180    UP000261680    UP000291021    UP000010552    UP000233100   

PRIDE

H9J4Y3    Q1HQ15    Q9VXE0   

Pfam

PF01423   LSM

Interpro

IPR010920   LSM_dom_sf        + More
IPR001163   LSM_dom_euk/arc       
IPR034098   Sm_G       

SUPFAM

SSF50182   SSF50182       

CDD

cd01719  Sm_G

ProteinModelPortal

H9J4Y3   Q1HQ15   S4PGP0   A0A212F3N4   A0A2W1BMX0   A0A2A4KBB8   + More
A0A2H1X0T2   E2B420   A0A226EIU5   A0A194QQ03   A0A1W4X4T0   A0A232F0W0   K7J8R5   A0A182IRN9   J3JZA2   Q56FI6   A0A182XAE8   A0A1Q3F0J4   A0A182Y412   A0A182M220   A0A182QSQ0   A0A182UQA8   A0A182NR59   B0W6T2   A0A182VZV2   A0A182TEM8   Q7QCM2   A0A182RTI7   A0A182HS87   A0A2M4AYN0   W5JQP2   A0A182FPH7   A0A2M4C589   A0A2A3ECH3   A0A088AF01   A0A182S7C0   E9ICB7   E2AS58   D6X2J3   A0A182PL54   A0A182K3E1   Q16XZ1   A0A023EDW5   A0A154PSX1   A0A0L7QKV5   A0A0M8ZRW4   F4X4B6   A0A158P3I9   A0A026W947   A0A0L7KIE3   T1H614   A0A1B0CN65   A0A067R1E0   E0VUZ1   A0A1W4V6C3   B4PXV5   B3MRC4   B3NVJ9   A0A1L8DGW6   A0A2P8YLF4   A0A1B0FJA6   A0A1I8M8R6   A0A1B0ALV8   A0A1I8PB85   A0A0L0CFR4   A0A1L8EI25   A0A212EMZ2   A0A1S3J1B5   B4R5V5   A0A1B2AJF9   B4IEQ4   Q9VXE0   U5EXK0   H3BEQ0   A0A3B0JCX6   B5DW06   B4G365   B4MAP8   B4L7Y5   A0A162QM09   E9H7R1   A0A0M5JB08   B4JK85   A0A336LZY7   B4NEV7   R7UTD8   A0A2U4BYH4   A0A2R8N006   A0A151P5Y4   A0A1U7S845   A0A0P6JIP8   I3MC06   A0A1U7QNB4   A0A286XV88   A0A091DE93   B5DEP7   A0A2K6M6R3   A0A384CUM2   L5KT73   A0A2K5WTS0  

PDB

6QX9     E-value=9.69252e-28,     Score=300

KEGG

732941    K11099 small nuclear ribonucleoprotein G | (RefSeq) small nuclear ribonucleoprotein G

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0005681   GO:0003723   GO:0000387   GO:0016021   GO:0071013   GO:0005685   GO:0043186   GO:0071004   GO:0034719   GO:0005689   GO:0005682   GO:0005686   GO:0005687   GO:0030532   GO:0000398   GO:0071011   GO:0005829   GO:0005634   GO:1990446   GO:0005732   GO:0005536   GO:0005975   GO:0046835   GO:0016773   GO:0006096   GO:0006281   GO:0006259  

Subcellular location

Nucleus  
Cytoplasm   SMN-mediated assembly into core snRNPs occurs in the cytosol before SMN-mediated transport to the nucleus to be included in spliceosomes.   With evidence from 1 publications.
Cytosol   SMN-mediated assembly into core snRNPs occurs in the cytosol before SMN-mediated transport to the nucleus to be included in spliceosomes.   With evidence from 1 publications.

Length:

76

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04689

Exp number, first 60 AAs:

0.04472

Total prob of N-in:

0.19104

outside

1  -  76

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.070612

CSRT

0

Interpretation

Uncertain