SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16636  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004605
Annotation
heat_shock_protein_hsp20.8_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.425 Extracellular   Reliability : 1.197 Mitochondrial   Reliability : 1.079
 

Sequence

CDS
ATGTCTCTTCTACCATTCGTGTTGGGTGACTGGCCCCGCGTTCGTCACAACCACTGGCCCAGTCGTCTTGTTGATCAAGATTTTGGATTGGCGCTAACCCCGAACGACATGCTGGCTGCCGTCGCCTGTCCAGTGCTCTCCGAAGACTACTTCAGACCATGGAGACAACTCGCGGCTGCATCTCGTGACCTCGGTTCCAGCATAAAGGCCGACAAGGACAAGTTCCAAGTCAATCTGGACGTGCAGCACTTCTCGCCGGAAGAGATTTCGGTGAAGACTGCCGATGGGTACATCGTGGTGGAAGGCAAGCACGAAGAGAAGAAAGACGAGCACGGGTATATTTCAAGGCAGTTCGTCCGACGTTACGCGCTGCCTGAAGGCGCGGCGCCTGAGACTGTGGAATCGCGACTGTCATCAGACGGGGTTCTCACCATCACCGCGCCGAGGAAGGTACCCGACGCCGTCAAGGGAGAGCGAAAGGTGCCCATCGCACAGACCGGTCCCGTTCGCAAGGAGATCAAGGACCAGAGCGAGGGAACCCAGGATGCCGAAAATAAGTAG
Protein
MSLLPFVLGDWPRVRHNHWPSRLVDQDFGLALTPNDMLAAVACPVLSEDYFRPWRQLAAASRDLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVEGKHEEKKDEHGYISRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAENK

Summary

Similarity
Belongs to the small heat shock protein (HSP20) family.
EMBL
KM881570    AJQ22645.1    AF315317    AF315319    FJ602772    AAG30944.1    + More
AAG30946.1    ACM24338.1    KR137569    ALI87024.1    NWSH01002265    PCG68755.1    MF067296    ASM61894.1    KX845562    KZ150055    ATB54993.1    PZC74337.1    HM046613    ADK55520.1    U94328    AAC36146.1    KP843896    AKS40075.1    ODYU01005718    SOQ46844.1    PZC74338.1    BABH01025846    AF315318    AAG30945.2    PCG68757.1    KQ460891    KPJ10837.1    HM046615    ADK55522.1    SOQ46842.1    KJ461916    AHW45918.1    KJ461920    AHW45922.1    JX491641    KC710020    AB244517    AGC23337.1    AGM90553.1    BAE94664.1    AGBW02014566    OWR41396.1    JQ708200    AFQ02692.1    KM217077    KM217078    AJA32865.1    KPJ10841.1    KC710018    KC710022    AGM90551.1    AGM90555.1    AK402622    BAM19244.1    DQ336356    ABC68342.2    KU096844    AMY63177.1    RSAL01000078    RVE48718.1    KQ459460    KPJ00666.1    KJ461917    AHW45919.1    RSAL01000012    RVE53492.1    KX958476    ASQ43192.1    FJ602788    ACM24354.1    MG816464    AYA93248.1    NWSH01003339    PCG66520.1    PCG66521.1    GAIX01009047    JAA83513.1    KY701309    ASK86231.1    AY829748    AAV91362.1    AB195970    BAD74195.1    KX845559    ATB54990.1    PZC74333.1    AB251898    BAF03558.1    KPJ00669.1    HM046617    ADK55524.1    KPJ10838.1    ODYU01012514    SOQ58867.1    HQ219475    ADX96000.1    HQ647012    AET10424.1    DQ063591    AAZ14792.1    KC710019    KC710024    AGM90552.1    AGM90557.1    RVE53491.1    KX958479    ASQ43195.1    AGBW02011158    OWR47131.1    KP843906    AKS40085.1    AY829747    AY829775    AAV91361.1    AAV91389.1    AGBW02008280    OWR53838.1    KM217079    AJA32867.1    KM217080    AJA32868.1    AGBW02012988    OWR44131.1    AGBW02008361    OWR53574.1    AB195971    BAD74196.1    FJ602780    ACM24346.1    KX977584    ATN45243.1    JTDY01014370    KOB52036.1    EU668902    ACD01216.1    JTDY01002160    KOB71979.1    GDQN01008714    JAT82340.1    HM359007    ADI48314.1    KPJ00670.1    GAIX01014246    JAA78314.1    OWR41397.1    DQ063589    AAZ14790.1    KX958482    ASQ43198.1    SOQ46845.1    NWSH01001148    PCG72391.1    KJ461913    AHW45915.1    KX977585    ATN45244.1    PCG72390.1    ODYU01008627    SOQ52368.1    HM046614    ADK55521.1    NWSH01000548    PCG75721.1    KC689795    KX845561    KZ150027    AGQ42773.1    ATB54992.1    PZC74791.1    MH042022    AXJ21597.1    KZ150133    PZC73025.1    AB195973    BAD74198.1    ODYU01009326    SOQ53668.1    BABH01035507    NWSH01000008    PCG80951.1    KQ460970    KPJ10176.1    BABH01042227    KQ459597    KPI95180.1    KP843907    AKS40086.1    HQ219476    ADX96001.1    DQ063590    AAZ14791.1    JTDY01002346    KOB71621.1    AB251897    BAF03557.1    KX958478    ASQ43194.1    KX958480    ASQ43196.1    KP843898    AKS40077.1    KPJ00755.1    PZC74790.1    KX958471    ASQ43187.1   
Pfam
PF00011   HSP20
Interpro
IPR002068   A-crystallin/Hsp20_dom        + More
IPR001436   Alpha-crystallin/HSP       
IPR008978   HSP20-like_chaperone       
IPR036116   FN3_sf       
IPR003961   FN3_dom       
SUPFAM
SSF49764   SSF49764        + More
SSF49265   SSF49265       
Gene 3D
PDB
3J07     E-value=6.57472e-20,     Score=235

Ontologies

Topology

Length:
186
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01411
Exp number, first 60 AAs:
0.01411
Total prob of N-in:
0.00551
outside
1  -  186
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0.225623
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
26280517 ADIPYQVEYAK 95.65 1e-09
27102218 TADGYIVVEGK 95.65 1e-09
31250652 YALPENCNPDTVESR 100.00 2e-06
28556443 LSSDGVLTITAPR 100.00 7e-04
26822097 KVPIAQTGPVRK 100.00 0.003
26280517 EIISNGSDAIDKIR 100.00 0.003
25044914 EIKDQSEEANEKEK 100.00 0.003
27102218 KVPIAQTGPVRK 100.00 0.003
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号