SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16625
Annotation
PREDICTED:_uncharacterized_protein_LOC101746563_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 2.364
 

Sequence

CDS
ATGGGGCGTTTTTTTTTTTATTTACCATTATTTGCTCCATTTCTTCTCTCGTTTCAGATATGCTCCAGTCTTTACTACAACCGAGAGAAAATCAGCGATGTGGCAGCTCTTCACGCTGTCGTAGGCTTACTACTCCTCGGTATCGTGGTACTGGTGGTGGGACTGGTACAACTGTCGCCTGGTGCGGAGGCTGCTCAGCATCGATACTATTTGATGGGAGCAGGCGGCGCAATGGTAGGGGCGGGCGTTCTAGGAGCTGTGTTAAGGTAA
Protein
MGRFFFYLPLFAPFLLSFQICSSLYYNREKISDVAALHAVVGLLLLGIVVLVVGLVQLSPGAEAAQHRYYLMGAGGAMVGAGVLGAVLR

Summary

Uniprot
ProteinModelPortal

Ontologies

GO

Topology

Length:
89
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
65.23271
Exp number, first 60 AAs:
45.00855
Total prob of N-in:
0.01956
POSSIBLE N-term signal
sequence
outside
1  -  4
TMhelix
5  -  27
inside
28  -  33
TMhelix
34  -  56
outside
57  -  65
TMhelix
66  -  88
inside
89  -  89
 
 

Population Genetic Test Statistics

Pi
13.395337
Theta
15.119947
Tajima's D
-0.342901
CLR
0.688913
CSRT
0.283085845707715
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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