SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16618  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012645
Annotation
unknown_[Picea_sitchensis]
Location in the cell
Extracellular   Reliability : 2.189
 

Sequence

CDS
ATGTACGCGGTCTATTACTGGCCCCCGAATCAGAGAACGAGGAACGCCTGCGAAGTACAAACCTTCAAGAAACTCGATACATACGAAATAGAAACCGCTAGGAACGGCTGCTCGAACCTCAGCCTCCCTTCAGAGGAGCCGGTCATCAGGGCCACGTACAAGAACAGCACCGGCAAAATCGTGAACGTCTTGTACTATGGGAGCGATTCGGTGAAGAACTTCTACAGGTCCTGCGACAAGGACGTCGCTAAGTACATATTCACGAGGGTCAACGAGGATTACATTCTGGGCATCAATTGCTCGTCGGAGGGGCGTAGCGTGCTGCTGTCCAAGCTCTTAGGCTCGCTGTCGACGGTCAAAAGGATCGTGGACGGTATAGATATTATGACCGGAAGAGAGGGAAGCCCGGATTGTGTGCTCGAACATTAA
Protein
MYAVYYWPPNQRTRNACEVQTFKKLDTYEIETARNGCSNLSLPSEEPVIRATYKNSTGKIVNVLYYGSDSVKNFYRSCDKDVAKYIFTRVNEDYILGINCSSEGRSVLLSKLLGSLSTVKRIVDGIDIMTGREGSPDCVLEH

Summary

Pfam
PF03392   OS-D        + More
PF00071   Ras
Interpro
IPR036682   OS_D_A10/PebIII_sf        + More
IPR005055   A10/PebIII       
IPR001806   Small_GTPase       
IPR027417   P-loop_NTPase       
IPR005225   Small_GTP-bd_dom       
IPR020849   Small_GTPase_Ras-type       
SUPFAM
SSF100910   SSF100910        + More
SSF52540   SSF52540       
Gene 3D

Ontologies

Topology

Length:
142
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00283
Exp number, first 60 AAs:
0.001
Total prob of N-in:
0.16627
outside
1  -  142
 
 

Population Genetic Test Statistics

Pi
5.686971
Theta
17.337009
Tajima's D
-2.032523
CLR
0
CSRT
0.0118494075296235
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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