Gene

KWMTBOMO16617

Pre Gene Modal

BGIBMGA012644

Annotation

PREDICTED:_ras-related_protein_Rab-23-like_[Bombyx_mori]

Location

Bomo_Scaf043(+):10586-17570      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.189

CDS

ATGCGCGAGGAGGAGCTGGAGGTGGCCCTGAAGGTGGTGATCGTCGGTGACGGCGGAGTCGGCAAGTCCAGTATGATACAGCGCTACTGCCGCGGCACCTTCACCAGGGACTACAAGAAGACCATCGGGGTCGACTTTCTTGAGAGACAGATCGAGATAGACGGCGAGGAAGTCCGACTGATGCTGTGGGACACGGCGGGCCAGGAGGAGTTCGACGCGATCACCAAGGCGTACTACCGCGGCGCCCACGCCTGCGTGCTCGCCTTCTCCACAACCGACCGAGACTCTTTCTTAGCGCTGCACTCCTGGAAGTTGAAAGTGGAGAATGAATGCGGCGAAATACCAACGATAATCGTTCAAAATAAAATCGATTTAATGGATCAATGTGTGGTTGGACCGTGA

Protein

MREEELEVALKVVIVGDGGVGKSSMIQRYCRGTFTRDYKKTIGVDFLERQIEIDGEEVRLMLWDTAGQEEFDAITKAYYRGAHACVLAFSTTDRDSFLALHSWKLKVENECGEIPTIIVQNKIDLMDQCVVGP

Uniprot

A0A194QF45   A0A212F6T1   D6WRN4   A0A1Y1M3N4   J3JWQ1   A0A067R0K1   + More
A0A2J7QER9   A0A1W4X3Q8   A0A1B6IGI0   A0A1B6KRG3   A0A1B6GRJ4   A0A165VFY4   K7J5H1   E2B7Q7   A0A3L8D8F4   E2AZR4   A0A3Q0IQI9   A0A2S2QFN0   C4WRN6   A0A0A9YTJ0   V5FYB7   A0A0P4VMA0   R4G8N7   A0A195CBJ6   A0A195AX51   A0A158NHS1   F4WY88   A0A2A3E5B8   U5EVL0   A0A023F8Z6   A0A1B6JTP9   A0A2M4AWL3   A0A2M4BYK0   Q7QGJ4   A0A222AIZ2   A0A1J1I7H6   A0A182FU70   A0A182P027   A0A182WES8   A0A182UX90   A0A182TUU9   A0A182LP37   A0A182X2N4   A0A182HN94   A0A182LRA3   A0A182RY17   A0A182MXS1   A0A182QPU5   A0A182Y606   A0A0L7QXV8   A0A0N0BJ14   A0A182JC48   A0A2M4CLZ3   A0A2M4CLT6   A0A1I8MPK8   A0A2M4CWX9   Q17KZ8   A0A182GYX6   A0A1A9ZZZ2   A0A0K8U3Q5   A0A034WM63   A0A2M4CLX6   A0A0L0CM89   A0A0A1WKS7   A0A1I8P1C7   A0A1A9YCT5   A0A1B0BUG5   W5JLP2   A0A1A9V7X4   A0A1B0G9L8   A0A1Q3FKN0   B0X036   T1IX75   K1QR50   A0A087TJS8   H9JSY2   A0A2P6KX83   A0A146M0M0   A0A026WZ76   A0A336MT29   A0A195FF65   A0A195EGC8   V4B4A1   A0A3B0KAL9   B4G481   Q297M1   A0A0M4F2X4   A0A1W4UWW0   B3LWF5   B4NLC6   B3P2I5   B4LZ65   B4PUW7   B4QX06   B4I458   Q9VNG6   B4KBH9   B4JGX9   E9H1I8   A0A194QX90  

Pubmed

26354079    22118469    18362917    19820115    28004739    22516182    + More
23537049    24845553    20075255    20798317    30249741    25401762    26823975    27129103    21347285    21719571    25474469    12364791    14747013    17210077    20966253    25244985    25315136    17510324    26483478    25348373    26108605    25830018    20920257    23761445    22992520    19121390    24508170    23254933    17994087    15632085    23185243    18057021    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    21292972   

EMBL

KQ459053    KPJ04039.1    AGBW02009975    OWR49440.1    KQ971354    EFA07061.1    + More
GEZM01041973    JAV80081.1    APGK01036247    APGK01036248    APGK01036249    APGK01036250    BT127669    KB740937    KB631668    AEE62631.1    ENN77764.1    ERL85155.1    KK853035    KDR12233.1    NEVH01015306    PNF27081.1    GECU01021676    JAS86030.1    GEBQ01025935    JAT14042.1    GECZ01004740    JAS65029.1    KT984801    AMZ00353.1    GL446201    EFN88270.1    QOIP01000011    RLU16765.1    GL444277    EFN61043.1    GGMS01007345    MBY76548.1    ABLF02031457    AK339845    BAH70556.1    GBHO01008668    GBRD01010339    GDHC01018430    JAG34936.1    JAG55485.1    JAQ00199.1    GALX01005796    JAB62670.1    GDKW01000346    JAI56249.1    ACPB03020901    GAHY01000652    JAA76858.1    KQ978023    KYM98070.1    KQ976725    KYM76622.1    ADTU01016033    ADTU01016034    GL888439    EGI60845.1    KZ288386    PBC26482.1    GANO01000976    JAB58895.1    GBBI01000787    JAC17925.1    GECU01005167    JAT02540.1    GGFK01011862    MBW45183.1    GGFJ01009024    MBW58165.1    AAAB01008834    EAA05694.4    KY563815    ASO76338.1    CVRI01000042    CRK95532.1    APCN01001891    AXCM01000524    AXCN02002308    KQ414699    KOC63452.1    KQ435724    KOX78348.1    GGFL01002125    MBW66303.1    GGFL01002124    MBW66302.1    GGFL01005658    MBW69836.1    CH477220    EAT47357.1    JXUM01021594    KQ560606    KXJ81643.1    GDHF01032539    GDHF01031349    GDHF01021756    JAI19775.1    JAI20965.1    JAI30558.1    GAKP01003500    JAC55452.1    GGFL01002158    MBW66336.1    JRES01000301    KNC32579.1    GBXI01014648    JAC99643.1    JXJN01020691    ADMH02000695    ETN65287.1    CCAG010022856    GFDL01007002    JAV28043.1    DS232228    EDS37911.1    JH431644    JH817566    EKC36223.1    KK115530    KFM65367.1    BABH01038906    BABH01038907    MWRG01004000    PRD30923.1    GDHC01005650    JAQ12979.1    KK107078    EZA60449.1    UFQT01002571    UFQT01002707    SSX33704.1    SSX33974.1    KQ981636    KYN38862.1    KQ978957    KYN27293.1    KB199650    ESP05283.1    OUUW01000007    SPP83139.1    CH479179    EDW25119.1    CM000070    EAL28184.1    KRT00534.1    KRT00535.1    KRT00536.1    CP012526    ALC45495.1    CH902617    EDV43788.1    KPU80466.1    KPU80467.1    CH964272    EDW84329.1    CH954181    EDV47935.1    CH940650    EDW67072.1    KRF83091.1    CM000160    EDW97774.1    KRK03954.1    CM000364    EDX11768.1    CH480821    EDW55001.1    AE014297    AY113574    AAF51970.1    AAM29579.1    CH933806    EDW13646.1    KRG00539.1    KRG00540.1    CH916369    EDV93757.1    GL732583    EFX74498.1    KQ461073    KPJ09570.1   

Proteomes

UP000053268    UP000007151    UP000007266    UP000019118    UP000030742    UP000027135    + More
UP000235965    UP000192223    UP000002358    UP000008237    UP000279307    UP000000311    UP000079169    UP000007819    UP000015103    UP000078542    UP000078540    UP000005205    UP000007755    UP000242457    UP000007062    UP000183832    UP000069272    UP000075885    UP000075920    UP000075903    UP000075902    UP000075882    UP000076407    UP000075840    UP000075883    UP000075900    UP000075884    UP000075886    UP000076408    UP000053825    UP000053105    UP000075880    UP000095301    UP000008820    UP000069940    UP000249989    UP000092445    UP000037069    UP000095300    UP000092443    UP000092460    UP000000673    UP000078200    UP000092444    UP000002320    UP000005408    UP000054359    UP000005204    UP000053097    UP000078541    UP000078492    UP000030746    UP000268350    UP000008744    UP000001819    UP000092553    UP000192221    UP000007801    UP000007798    UP000008711    UP000008792    UP000002282    UP000000304    UP000001292    UP000000803    UP000009192    UP000001070    UP000000305    UP000053240   

PRIDE

H9JSY2    Q9VNG6   

Pfam

PF00071   Ras

Interpro

IPR001806   Small_GTPase        + More
IPR020849   Small_GTPase_Ras-type       
IPR027417   P-loop_NTPase       
IPR005225   Small_GTP-bd_dom       
IPR034114   Rab23       

SUPFAM

SSF52540   SSF52540       

CDD

cd04106  Rab23_like

ProteinModelPortal

A0A194QF45   A0A212F6T1   D6WRN4   A0A1Y1M3N4   J3JWQ1   A0A067R0K1   + More
A0A2J7QER9   A0A1W4X3Q8   A0A1B6IGI0   A0A1B6KRG3   A0A1B6GRJ4   A0A165VFY4   K7J5H1   E2B7Q7   A0A3L8D8F4   E2AZR4   A0A3Q0IQI9   A0A2S2QFN0   C4WRN6   A0A0A9YTJ0   V5FYB7   A0A0P4VMA0   R4G8N7   A0A195CBJ6   A0A195AX51   A0A158NHS1   F4WY88   A0A2A3E5B8   U5EVL0   A0A023F8Z6   A0A1B6JTP9   A0A2M4AWL3   A0A2M4BYK0   Q7QGJ4   A0A222AIZ2   A0A1J1I7H6   A0A182FU70   A0A182P027   A0A182WES8   A0A182UX90   A0A182TUU9   A0A182LP37   A0A182X2N4   A0A182HN94   A0A182LRA3   A0A182RY17   A0A182MXS1   A0A182QPU5   A0A182Y606   A0A0L7QXV8   A0A0N0BJ14   A0A182JC48   A0A2M4CLZ3   A0A2M4CLT6   A0A1I8MPK8   A0A2M4CWX9   Q17KZ8   A0A182GYX6   A0A1A9ZZZ2   A0A0K8U3Q5   A0A034WM63   A0A2M4CLX6   A0A0L0CM89   A0A0A1WKS7   A0A1I8P1C7   A0A1A9YCT5   A0A1B0BUG5   W5JLP2   A0A1A9V7X4   A0A1B0G9L8   A0A1Q3FKN0   B0X036   T1IX75   K1QR50   A0A087TJS8   H9JSY2   A0A2P6KX83   A0A146M0M0   A0A026WZ76   A0A336MT29   A0A195FF65   A0A195EGC8   V4B4A1   A0A3B0KAL9   B4G481   Q297M1   A0A0M4F2X4   A0A1W4UWW0   B3LWF5   B4NLC6   B3P2I5   B4LZ65   B4PUW7   B4QX06   B4I458   Q9VNG6   B4KBH9   B4JGX9   E9H1I8   A0A194QX90  

PDB

1Z2A     E-value=9.44652e-45,     Score=447

KEGG

101739735    K06234 Ras-related protein Rab-23 | (RefSeq) ras-related protein Rab-23-like

GO

GO:0003924   GO:0005525   GO:0019003   GO:0005886   GO:0007265   GO:0005776   GO:0010008   GO:0000045   GO:0032482   GO:0006886   GO:0045202   GO:0001738   GO:0043025   GO:0005737   GO:0050714   GO:0031982   GO:0055037   GO:0016192  

PANTHER

PTHR24070  

Length:

133

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01013

Exp number, first 60 AAs:

0.00964

Total prob of N-in:

0.07198

outside

1  -  133

 

 

Pi

4.760269

Theta

16.874655

Tajima's D

-2.083069

CLR

0

CSRT

0.00994950252487376

Interpretation

Uncertain