Silkworm Genome Informatics Database

Gene

KWMTBOMO16615

Pre Gene Modal

BGIBMGA003782

Annotation

PREDICTED:_TBC1_domain_family_member_20?_partial_[Bombyx_mori]

Location

Bomo_Scaf040(+):37976-39663 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 2.105

CDS

ATGACGTGGCGATCACCCTGCTCTTGGTGTGCGGAGACGTGCCTCGTTCCGCTGCTGTGCCGCCTGTCCTACGGCGCCGGGGCTCCGCTGGCGCCCTTCATGCAGCTCACGATGCAGCCCACGCAGCATCTGCTCAATTACATGCTGCCAGTCGTGGGCAGAGCCAATACCAAACTGGCCAATAGACTTGAAGAGGCGGGTGTGGGCACGATGTTCGCGCTGCCGTGGTACCTGACGTGGTTCGGGCACAGCCTGGGCCGGTACGCGCTCGTCGTGCGCCTCTACGACTACTTCCTGTGCGCGCCGCCGCTCTTCCCCGTGTACGTCACCGCCGCCGTCGTGCTGTGCAGGTATGCACTGCCCCTCCCCCCGCCCCCTCCATATGCTTAG

Protein

MTWRSPCSWCAETCLVPLLCRLSYGAGAPLAPFMQLTMQPTQHLLNYMLPVVGRANTKLANRLEEAGVGTMFALPWYLTWFGHSLGRYALVVRLYDYFLCAPPLFPVYVTAAVVLCRYALPLPPPPPYA

Uniprot

H9J2P5 A0A212EMK6 A0A2H1VTQ0 A0A2H1V8F4 A0A0L7LIW4 A0A194QNK7 + More
A0A194QH65 A0A2A4K940 A0A1B6L9V0 A0A2J7QCU1 A0A1B6JK03

Pubmed

19121390 22118469 26227816 26354079

EMBL

BABH01034447 AGBW02013812 OWR42722.1 ODYU01004222 SOQ43872.1 ODYU01001200 + More
SOQ37089.1 JTDY01000935 KOB75370.1 KQ461191 KPJ07097.1 KQ458860 KPJ04759.1 NWSH01000050 PCG80182.1 GEBQ01019504 JAT20473.1 NEVH01015876 PNF26397.1 GECU01008219 JAS99487.1

Proteomes

UP000005204 UP000007151 UP000037510 UP000053240 UP000053268 UP000218220 + More
UP000235965

PRIDE

H9J2P5

Pfam

PF00566 RabGAP-TBC

Interpro

IPR000195 Rab-GTPase-TBC_dom + More
IPR035969 Rab-GTPase_TBC_sf

SUPFAM

SSF47923 SSF47923

ProteinModelPortal

H9J2P5 A0A212EMK6 A0A2H1VTQ0 A0A2H1V8F4 A0A0L7LIW4 A0A194QNK7 + More
A0A194QH65 A0A2A4K940 A0A1B6L9V0 A0A2J7QCU1 A0A1B6JK03

PDB

4HL4 E-value=1.4677e-21, Score=247

KEGG

101740586 K20372 TBC1 domain family member 20 | (RefSeq) TBC1 domain family member 20

GO

GO:0016021

Length:

129

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

43.20137

Exp number, first 60 AAs:

7.65603

Total prob of N-in:

0.67050

inside

1 - 96

TMhelix

97 - 119

outside

120 - 129

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree