SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16615
Pre Gene Modal
BGIBMGA003782
Annotation
PREDICTED:_TBC1_domain_family_member_20?_partial_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 2.105
 

Sequence

CDS
ATGACGTGGCGATCACCCTGCTCTTGGTGTGCGGAGACGTGCCTCGTTCCGCTGCTGTGCCGCCTGTCCTACGGCGCCGGGGCTCCGCTGGCGCCCTTCATGCAGCTCACGATGCAGCCCACGCAGCATCTGCTCAATTACATGCTGCCAGTCGTGGGCAGAGCCAATACCAAACTGGCCAATAGACTTGAAGAGGCGGGTGTGGGCACGATGTTCGCGCTGCCGTGGTACCTGACGTGGTTCGGGCACAGCCTGGGCCGGTACGCGCTCGTCGTGCGCCTCTACGACTACTTCCTGTGCGCGCCGCCGCTCTTCCCCGTGTACGTCACCGCCGCCGTCGTGCTGTGCAGGTATGCACTGCCCCTCCCCCCGCCCCCTCCATATGCTTAG
Protein
MTWRSPCSWCAETCLVPLLCRLSYGAGAPLAPFMQLTMQPTQHLLNYMLPVVGRANTKLANRLEEAGVGTMFALPWYLTWFGHSLGRYALVVRLYDYFLCAPPLFPVYVTAAVVLCRYALPLPPPPPYA

Summary

Pfam
PF00566   RabGAP-TBC
Interpro
IPR000195   Rab-GTPase-TBC_dom        + More
IPR035969   Rab-GTPase_TBC_sf       
SUPFAM
SSF47923   SSF47923       
PDB
4HL4     E-value=1.4677e-21,     Score=247

Ontologies

Topology

Length:
129
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
43.20137
Exp number, first 60 AAs:
7.65603
Total prob of N-in:
0.67050
inside
1  -  96
TMhelix
97  -  119
outside
120  -  129
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号