Gene

KWMTBOMO16614

Annotation

PREDICTED:_TBC1_domain_family_member_20?_partial_[Bombyx_mori]

Location

Bomo_Scaf040(+):33236-36143      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.744

CDS

ATGGAATCCAATAATAAAGACAGTGAAGTTATAGATAAAAGTGTTATGAATGGTGAATGTTCACCAGCAGAGAGTATTCATCCGACAAATTTGAATAAAACGAAAAATATTGATGTCATTTCGACACCCTCCGAATTAAAATTCGATAATGAGCCGGAGGAGGAAGACCCCGAGATTGTAGAAAAGAGGAAAGAGATTGAGGAATGTCTCTCTGATGTCGATTCTGTTGATGTGGAAAAATGGAAGAATCTAGCCAGAAGCAAAGGAGGACTTATCTGTGATGAATACAGAAGAAGAATTTGGCCTCTGCTTGTTGGTGTTACAAAAGAGGAAATGACTGAAGCTCCATCATTGGATGAGTTATCAACGCATCCAGAATATAACCAGGTGGTGCTAGATGTGAACAGGTCTTTGAAAAGATTTCCTCCTGGCATTCCATACGAACAAAGAGTGGCCCTTCAGGACCAGCTGACAGTATTAATACTCAGGGTCATCATAAAATATCCACATTTAAAATATTACCAGTTTGAGAGAGCGCTTCGTGGTTTATGA

Protein

MESNNKDSEVIDKSVMNGECSPAESIHPTNLNKTKNIDVISTPSELKFDNEPEEEDPEIVEKRKEIEECLSDVDSVDVEKWKNLARSKGGLICDEYRRRIWPLLVGVTKEEMTEAPSLDELSTHPEYNQVVLDVNRSLKRFPPGIPYEQRVALQDQLTVLILRVIIKYPHLKYYQFERALRGL

Uniprot

A0A212EMK6   H9J2P5   A0A2H1VZB4   A0A2A4K940   A0A194QNK7   A0A1E1W704   + More
A0A194QH65   A0A0L7LIW4   A0A182MB07   A0A182Y3D8   A0A182QKK8   A0A182RMC2   Q17L28   A0A182JYL8   A0A182W6M4   A0A182NTT0   U4TUT9   A0A336LQX9   A0A1J1I456   A0A1Y1NEC9   A0A0T6AUY3   A0A0A9VSX9   A0A146L848   D6WM56   A0A1B6CZ04   A0A224XH78   A0A0V0GCC1   A0A069DU99  

Pubmed

22118469    19121390    26354079    26227816    25244985    17510324    + More
23537049    28004739    25401762    26823975    18362917    19820115    26334808   

EMBL

AGBW02013812    OWR42722.1    BABH01034447    ODYU01005372    SOQ46143.1    NWSH01000050    + More
PCG80182.1    KQ461191    KPJ07097.1    GDQN01008320    JAT82734.1    KQ458860    KPJ04759.1    JTDY01000935    KOB75370.1    AXCM01002003    AXCN02000803    CH477219    EAT47398.1    KB631676    ERL85319.1    UFQT01000055    SSX19093.1    CVRI01000038    CRK94380.1    GEZM01009504    JAV94546.1    LJIG01022744    KRT78943.1    GBHO01044157    GBRD01000514    JAF99446.1    JAG65307.1    GDHC01014086    JAQ04543.1    KQ971343    EFA03356.2    GEDC01026199    GEDC01024939    GEDC01018723    JAS11099.1    JAS12359.1    JAS18575.1    GFTR01006042    JAW10384.1    GECL01000412    JAP05712.1    GBGD01001607    JAC87282.1   

Proteomes

UP000007151    UP000005204    UP000218220    UP000053240    UP000053268    UP000037510    + More
UP000075883    UP000076408    UP000075886    UP000075900    UP000008820    UP000075881    UP000075920    UP000075884    UP000030742    UP000183832    UP000007266   

PRIDE

H9J2P5   

Pfam

PF00566   RabGAP-TBC

Interpro

IPR000195   Rab-GTPase-TBC_dom        + More
IPR035969   Rab-GTPase_TBC_sf       

SUPFAM

SSF47923   SSF47923       

ProteinModelPortal

A0A212EMK6   H9J2P5   A0A2H1VZB4   A0A2A4K940   A0A194QNK7   A0A1E1W704   + More
A0A194QH65   A0A0L7LIW4   A0A182MB07   A0A182Y3D8   A0A182QKK8   A0A182RMC2   Q17L28   A0A182JYL8   A0A182W6M4   A0A182NTT0   U4TUT9   A0A336LQX9   A0A1J1I456   A0A1Y1NEC9   A0A0T6AUY3   A0A0A9VSX9   A0A146L848   D6WM56   A0A1B6CZ04   A0A224XH78   A0A0V0GCC1   A0A069DU99  

PDB

4HLQ     E-value=2.51398e-16,     Score=204

KEGG

101740586    K20372 TBC1 domain family member 20 | (RefSeq) TBC1 domain family member 20

GO

GO:0016021   GO:0005789   GO:0005096   GO:0006888   GO:0017137  

Length:

183

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01105

Exp number, first 60 AAs:

0

Total prob of N-in:

0.20588

outside

1  -  183

 

 

Pi

12.657412

Theta

14.302821

Tajima's D

-0.344909

CLR

0

CSRT

0.285135743212839

Interpretation

Uncertain