SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16608
Pre Gene Modal
BGIBMGA004477
Annotation
PREDICTED:_uncharacterized_protein_LOC105388961_[Plutella_xylostella]
Location in the cell
Nuclear   Reliability : 2.414
 

Sequence

CDS
ATGAACATCCCGACAGCACATCTTAATAAAGATGAATTGTTATTTGAGCTGTCAATCTTTGGCATCTTCAGCGATCCCGATGCGACCAGGGACGCGCTTCGCCAGCAGCTGCGGCAGGCGCTCCGTCTTCACAGACGAGGCAGCCTGAAGCTGGATGCGGGCGAGGTTGTGGATGACGTGTCGACCGTCACTACCAAGGTCACCGAGCTGGAGACGCTACTTGCGACTGAGGTACCCTCAACACAACGAAACACACGCATTAAAGCTAGGTCCACATACCTTTTAGATAGAATTGAAAGAATGAAGGATGTGAGCGTGGCGTGTATGAAATTAAAGTCCAGGTTGGTTAGGCTGCTTGCGGCTCTTAGTGATGATGAAGGTGGAGGTACTGACTCCGAATCTGAGCTACAGAGTTGTGCTAGTCCTACAAAGCCACATACTTCGGGCTGTCCTCATGATGTGGATGGTACCAGTCATCCCATTCAATTTAATGAAAGGCTAACAAATTTTAATTCCTTTAACATCAAATATGATGGCACAACGTGTATAAGAGCATTTTTAGAACGTGTAAAAGAGTTACAATTATCAAGAAATGTTAGTGAGAAACAATTATTATACGGATTCCCGGATCTCTTAGAAAAAGCACCTTTATTTTGGTTTAGGGCCAATCGTTCAAATTTTAAAAGCTTGAACGATCTTTTAGCGAATTAA
Protein
MNIPTAHLNKDELLFELSIFGIFSDPDATRDALRQQLRQALRLHRRGSLKLDAGEVVDDVSTVTTKVTELETLLATEVPSTQRNTRIKARSTYLLDRIERMKDVSVACMKLKSRLVRLLAALSDDEGGGTDSESELQSCASPTKPHTSGCPHDVDGTSHPIQFNERLTNFNSFNIKYDGTTCIRAFLERVKELQLSRNVSEKQLLYGFPDLLEKAPLFWFRANRSNFKSLNDLLAN

Summary

Pfam
PF03732   Retrotrans_gag
Interpro
IPR005162   Retrotrans_gag_dom        + More
IPR036533   BAG_dom_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF57756   SSF57756       
Gene 3D

Ontologies

Topology

Length:
236
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00464
Exp number, first 60 AAs:
0.00335
Total prob of N-in:
0.07957
outside
1  -  236
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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