SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16600  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003340
Annotation
PREDICTED:_presqualene_diphosphate_phosphatase-like_isoform_X1_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.844
 

Sequence

CDS
ATGGATATGTTAGGAGAAACAGAGAAAAAGCGTCAAACTCCACCCATGTTGAAAAAAATTTTGCAGTATGATGTTCAAATTACGAAGACATTTGTTGACAGAGCACTAAAAATAACTGCTCTAAAGTCTTTACGGAACCATTCTCAATTACTAGAGATATCATGTCATGGCATAGTTTGGCTGGCAGGCTGGCTCACTTTCATATGGCTGTTTAATAGTAAAGATCTTTACCAGTTGCAAGTTAATATGTTGATTGCACTAATTTTAGACATTGTTGTGGTAGCTGTATTGAAAGCATTTGTAAGAAGACGTCGACCGGTACCAATGAATAAGCTCATGGAAGTTGGTCCTGATAAGTTCTCATTCCCATCCGGACATGCAAGCAGGGCTGTGCTCATCTCGTTCATTTTAATATACTTTGATTCGGTATCAATAATTTTCTACCCCCCACTTATGGCTTGGGTAGTTTCAGTGTCCATTTCCAGGGTATTGGCTGAACGTCACTATCTACTGGACAGCATAGGAGGTGTGGGTATTGGAATTCTTGAAGGTCTCTTCATGTCCCTCATATGGTTGTCCCAAAGTACATCTGCTAGTATTCTGTCATCATTGTCTGATGAAAAATTAGATGGTGGAGAATACCATGTATAA
Protein
MDMLGETEKKRQTPPMLKKILQYDVQITKTFVDRALKITALKSLRNHSQLLEISCHGIVWLAGWLTFIWLFNSKDLYQLQVNMLIALILDIVVVAVLKAFVRRRRPVPMNKLMEVGPDKFSFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSISRVLAERHYLLDSIGGVGIGILEGLFMSLIWLSQSTSASILSSLSDEKLDGGEYHV

Summary

EMBL
BABH01023818    BABH01023819    BABH01023820    KQ459602    KPI93567.1    AGBW02011690    + More
OWR46291.1    JTDY01011271    KOB57161.1    GAIX01012345    JAA80215.1    KQ460106    KPJ17775.1    ODYU01005012    SOQ45477.1    GFDG01001818    JAV16981.1    GFDG01001819    JAV16980.1    ATLV01022986    KE525339    KFB48219.1    CH477526    EAT39531.1    GAPW01004030    JAC09568.1    GAPW01004009    JAC09589.1    AAAB01008960    EAA11926.4    AXCN02000446    GAPW01004090    JAC09508.1    AXCM01004988    APCN01000128    GGFL01001608    MBW65786.1    GGFM01004403    MBW25154.1    GGFL01001609    MBW65787.1    ADMH02000243    ETN67258.1    GGFJ01009078    MBW58219.1    GGFM01004480    MBW25231.1    GANO01003729    JAB56142.1    GGFJ01009077    MBW58218.1    GGFK01007593    MBW40914.1    GGFK01007680    MBW41001.1    GAMD01000462    JAB01129.1    NEVH01013964    PNF28183.1    KQ971318    EFA00398.1    NNAY01000431    OXU28444.1    GBYB01004380    JAG74147.1    DS231833    EDS32218.1    GFDL01008565    JAV26480.1    GEDC01016473    JAS20825.1    KK852458    KDR23552.1    CH480818    EDW52379.1    CM000361    CM002910    EDX04482.1    KMY89448.1    GL452875    EFN76643.1    AY075278    AE014134    AAL68145.1    AAN10729.1    AGB92852.1    UFQS01003315    UFQT01002298    UFQT01003315    SSX15479.1    SSX33146.1    CH902620    EDV32286.1    GAPW01004575    JAC09023.1    GFDF01002597    JAV11487.1    CM000157    EDW88767.1    GFDF01002598    JAV11486.1    CH954177    EDV58483.2    CAQQ02390494    CH940654    EDW57497.2    LJIG01022599    KRT79719.1    CH916372    EDV98874.1    QOIP01000009    RLU18780.1    CH933807    EDW12318.2    GECU01030620    GECU01025035    JAS77086.1    JAS82671.1    JRES01000473    KNC30986.1    KRG03187.1    GL888497    EGI60108.1    KQ414627    KOC67456.1    DS235759    EEB16515.1    KQ769940    OAD52747.1    ADTU01014582    KZ288515    PBC25110.1    JR044183    AEY59847.1    GECZ01001645    JAS68124.1    GBYB01012440    JAG82207.1    CH379059    EAL34239.3    CVRI01000048    CRK98762.1    GDHF01012441    GDHF01008912    JAI39873.1    JAI43402.1    CH479180    EDW28378.1    KK107119    EZA58792.1    GEBQ01009296    JAT30681.1    KK107348    EZA52143.1    KQ981163    KYN45395.1    KQ982893    KYQ49550.1    ABLF02034274    GALA01001428    JAA93424.1    PYGN01002270    PSN30949.1    KQ976514    KYM82322.1    GDHF01007894    JAI44420.1    CH964289    EDW86144.2   
Pfam
PF01569   PAP2        + More
PF18044   zf-CCCH_4
PF16543   DFRP_C
Interpro
IPR036938   P_Acid_Pase_2/haloperoxi_sf        + More
IPR000326   P_Acid_Pase_2/haloperoxidase       
IPR032378   ZC3H15/TMA46_C       
IPR000571   Znf_CCCH       
IPR036855   Znf_CCCH_sf       
IPR041367   Znf-CCCH_4       
SUPFAM
SSF48317   SSF48317        + More
SSF90229   SSF90229       

Ontologies

Topology

Length:
216
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
86.79536
Exp number, first 60 AAs:
10.75679
Total prob of N-in:
0.96672
POSSIBLE N-term signal
sequence
inside
1  -  49
TMhelix
50  -  69
outside
70  -  78
TMhelix
79  -  101
inside
102  -  132
TMhelix
133  -  155
outside
156  -  169
TMhelix
170  -  192
inside
193  -  216
 
 

Population Genetic Test Statistics

Pi
1.259235
Theta
3.195124
Tajima's D
-1.691542
CLR
0.839381
CSRT
0.0291985400729964
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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