Gene

KWMTBOMO16581

Pre Gene Modal

BGIBMGA005582

Annotation

SOCS2-12_protein_[Bombyx_mori]

Location

Bomo_Scaf027(+):31906-38782      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.114 Nuclear   Reliability : 1.131

CDS

ATGACTCTTGCAGCGCGAATTACCCCACAAAATGCGTGCTTGGAAGTAGGTGTGCCTCTGGGTGGCTGGTCGTCAGGTGTGGCATGCTGTCCGAATTGCAGGCACCAATTGCGAGTATCACTCGCGCCGGCGTCGGGCAAGTGTCACGCTTTGCCGTCGCCGCACACGCCGCCTTTCACCGTCCCCCCAACGTATTGGCCACATTCGCCTTTGTACGCGCCGCCATCACCGATCGTTCCGGCGCCTTACAATGATGAACTGAAGCGGCTTGCTGATACCCTCAGTGCGCTTAGGCTCTCTGGGTGGTACTACGATACTTTGAATTGGCAGGGAGCGAGAACATTGTTAAAAGACGCCAGTGTCGGAGCTTTTGTCGTGAGAGACTCTGGAGATAGAAACTTTATATTCTCACTATCGGTGCAAACGGAAAGGGGCCCTACATCCGTGAGGCTTCACTACGAACAAGGATTCTTCAGGTTAGATTGTGACAGACCGTTGGCTAGGTACATGCCCCGGTTCAGATGCGTGGTGGAAATGGTGCAGCAGTACAGACGGGCGGGACAACGCGGTGCGGCCGGTACGGTGTGGGTGGACCGCGAGGGGTGTCCGCATTCGCCGGTGTTACTCACCCATCCACTAAGGAAGAGCCCCCCATCTCTCATGCACGCGGCCCGTCTCGCTGTACACAAAGCCCTCGACTCCAACCCCCTCACTCCCAAGCTCTGGTGCGCTCCTAAACACAGGCTCCTCCCTCTCCCCTCCACTCTAATAGACTACCTAGGCGAATATCCGTACTCGATCTAA

Protein

MTLAARITPQNACLEVGVPLGGWSSGVACCPNCRHQLRVSLAPASGKCHALPSPHTPPFTVPPTYWPHSPLYAPPSPIVPAPYNDELKRLADTLSALRLSGWYYDTLNWQGARTLLKDASVGAFVVRDSGDRNFIFSLSVQTERGPTSVRLHYEQGFFRLDCDRPLARYMPRFRCVVEMVQQYRRAGQRGAAGTVWVDREGCPHSPVLLTHPLRKSPPSLMHAARLAVHKALDSNPLTPKLWCAPKHRLLPLPSTLIDYLGEYPYSI

Uniprot

H9J7U0   F2XHI7   A0A2A4JZA5   A0A2H1W606   A0A194QCF5   A0A194QTD5   + More
A0A212EIU7   S4NSQ6   A0A0L7LJJ7   A0A1Y1KR34   V5I9A8   A0A2J7QEB9   A0A1W4WWN6   A0A2P8ZGQ1   A0A1B6JB10   A0A1B6LK57   A0A1B6FRU0   A0A1B6GJF9   A0A1B6LC24   A0A1B6EG95   A0A1B6FYR9   D6WVY8   L7MGA8   L7MGX2   A0A1Z5L4I6   A0A067QTM3   T1HD47   A0A0A9YZI6   A0A2R5LDF8   A0A023F0Z3   A0A1V9XP72   A0A224XVT4   D1G5I2   A0A0P4WFV5   E0VHG6   A0A2L2Y088   E2C1J5   A0A154PIK3   W4XHC4   A0A0P4VR82   E9IR72   A0A0K0YBD3   A0A310SA25   C3YM24   A0A3Q0IJH3   A0A026WLC2   A0A3L8DCU6  

Pubmed

19121390    26354079    22118469    23622113    26227816    28004739    + More
29403074    18362917    19820115    25576852    28528879    24845553    25401762    26823975    25474469    28327890    19686773    20566863    26561354    20798317    27129103    21282665    26206609    18563158    24508170    30249741   

EMBL

BABH01020142    HQ540306    ADZ99024.1    NWSH01000358    PCG77018.1    ODYU01006570    + More
SOQ48521.1    KQ459232    KPJ02665.1    KQ461155    KPJ08265.1    AGBW02014579    OWR41390.1    GAIX01013972    JAA78588.1    JTDY01000867    KOB75622.1    GEZM01075900    JAV63889.1    GALX01003260    JAB65206.1    NEVH01015316    PNF26932.1    PYGN01000062    PSN55668.1    GECU01011315    JAS96391.1    GEBQ01015917    JAT24060.1    GECZ01030540    GECZ01017046    GECZ01015887    GECZ01014650    GECZ01010793    JAS39229.1    JAS52723.1    JAS53882.1    JAS55119.1    JAS58976.1    GECZ01030276    GECZ01026536    GECZ01017024    GECZ01013011    GECZ01007218    JAS39493.1    JAS43233.1    JAS52745.1    JAS56758.1    JAS62551.1    GEBQ01018749    JAT21228.1    GEDC01000387    JAS36911.1    GECZ01014447    JAS55322.1    KQ971359    EFA08217.1    GACK01001798    JAA63236.1    GACK01001799    JAA63235.1    GFJQ02004711    JAW02259.1    KK853286    KDR08949.1    ACPB03009573    GBHO01005162    GBHO01005161    GBHO01005160    GBRD01014823    GDHC01006644    GDHC01001396    JAG38442.1    JAG38443.1    JAG38444.1    JAG51003.1    JAQ11985.1    JAQ17233.1    GGLE01003372    MBY07498.1    GBBI01004026    JAC14686.1    MNPL01006790    OQR75138.1    GFTR01003856    JAW12570.1    FJ607955    ACU42699.1    GDRN01092046    GDRN01092045    JAI60164.1    DS235170    EEB12822.1    IAAA01006484    IAAA01006485    LAA01593.1    GL451937    EFN78171.1    KQ434924    KZC11642.1    AAGJ04061948    GDKW01003965    JAI52630.1    GL765099    EFZ16932.1    KR476664    AKS48289.1    KQ762541    OAD55668.1    GG666529    EEN58618.1    KK107167    EZA56456.1    QOIP01000010    RLU18126.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000235965    UP000192223    UP000245037    UP000007266    UP000027135    UP000015103    UP000192247    UP000009046    UP000008237    UP000076502    UP000007110    UP000001554    UP000079169    UP000053097    UP000279307   

PRIDE

H9J7U0    F2XHI7   

Pfam

PF07525   SOCS_box        + More
PF00017   SH2
PF10324   7TM_GPCR_Srw

Interpro

IPR000980   SH2        + More
IPR001496   SOCS_box       
IPR036860   SH2_dom_sf       
IPR036036   SOCS_box-like_dom_sf       
IPR017452   GPCR_Rhodpsn_7TM       
IPR000276   GPCR_Rhodpsn       
IPR019427   7TM_GPCR_serpentine_rcpt_Srw       

SUPFAM

SSF55550   SSF55550        + More
SSF158235   SSF158235       

Gene 3D

3.30.505.10    

ProteinModelPortal

H9J7U0   F2XHI7   A0A2A4JZA5   A0A2H1W606   A0A194QCF5   A0A194QTD5   + More
A0A212EIU7   S4NSQ6   A0A0L7LJJ7   A0A1Y1KR34   V5I9A8   A0A2J7QEB9   A0A1W4WWN6   A0A2P8ZGQ1   A0A1B6JB10   A0A1B6LK57   A0A1B6FRU0   A0A1B6GJF9   A0A1B6LC24   A0A1B6EG95   A0A1B6FYR9   D6WVY8   L7MGA8   L7MGX2   A0A1Z5L4I6   A0A067QTM3   T1HD47   A0A0A9YZI6   A0A2R5LDF8   A0A023F0Z3   A0A1V9XP72   A0A224XVT4   D1G5I2   A0A0P4WFV5   E0VHG6   A0A2L2Y088   E2C1J5   A0A154PIK3   W4XHC4   A0A0P4VR82   E9IR72   A0A0K0YBD3   A0A310SA25   C3YM24   A0A3Q0IJH3   A0A026WLC2   A0A3L8DCU6  

PDB

6I5J     E-value=1.81419e-21,     Score=251

KEGG

100862764    K04695 suppressor of cytokine signaling 2 | (RefSeq) SOCS2-12; SOCS2-12 protein

GO

GO:0001558   GO:0008269   GO:0005737   GO:0005159   GO:0035556   GO:0046426   GO:0008528   GO:0016021  

Length:

267

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00670999999999998

Exp number, first 60 AAs:

0.0063

Total prob of N-in:

0.05573

outside

1  -  267

 

 

Pi

26.232041

Theta

26.41521

Tajima's D

-0.853254

CLR

0.019009

CSRT

0.165091745412729

Interpretation

Uncertain