Silkworm Genome Informatics Database

Gene

KWMTBOMO16580

Pre Gene Modal

BGIBMGA007216

Annotation

PREDICTED:_lachesin-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Scaf026(-):47798-49195 View in EpiBrowser

Location in the cell

Extracellular Reliability : 2.078 PlasmaMembrane Reliability : 1.48

CDS

ATGTGGTACCGACACCGCCGTTCGGGGACTAGTACCACCGCTCTGCTCAAATCAGTTATAATAGTAGTGTGTTGTTTGGTTGTTGCAGTGTTGTCGTGTGGCGAGGCCGGCGGCGGCGGGCGGCTCGTGAAGCGCTACGTGGGGCTCTACACGGGACCCTACTTCGACCCCTCGGCGCCCAACAACATAACCACGCAGCTCGGCACGCACGCCTATCTGCCCTGCAAGGTCCGTCAGCTGAGCAACAAGTCGGTGTCGTGGATCCGGCGCCGGGACGCACACATCCTCACCGTGGACCGGTTCACGTTCATCGCCGACGAGCGCTTCCAAGCCTTCCTGGTCGAGGCGACCGACACCTGGACCTTGCAGGTCAGTCACCGCCCCACCGTCGCCCTACCGCCGCCCTACCATCGCTCTGTACTGCATTCCAACGCAAGTCGCGGTACCCTATCGGTAGAATGA

Protein

MWYRHRRSGTSTTALLKSVIIVVCCLVVAVLSCGEAGGGGRLVKRYVGLYTGPYFDPSAPNNITTQLGTHAYLPCKVRQLSNKSVSWIRRRDAHILTVDRFTFIADERFQAFLVEATDTWTLQVSHRPTVALPPPYHRSVLHSNASRGTLSVE

Uniprot

H9JCH1 E9IJB8

Pubmed

19121390 21282665

EMBL

BABH01031716 BABH01031717 GL763764 EFZ19333.1

Proteomes

UP000005204

PRIDE

H9JCH1

Pfam

PF07686 V-set

Interpro

IPR007110   Ig-like_dom        + More
IPR003599   Ig_sub
IPR013783   Ig-like_fold
IPR037448   Zig-8
IPR013106   Ig_V-set
IPR003598   Ig_sub2
IPR036179   Ig-like_dom_sf

SUPFAM

SSF48726 SSF48726

Gene 3D

2.60.40.10

ProteinModelPortal

H9JCH1 E9IJB8

PDB

6NRR E-value=7.85756e-22, Score=250

KEGG

101745031 no KO assigned | (RefSeq) lachesin-like

GO

GO:0005515 GO:0008270 GO:0046872 GO:0003676 GO:0004930 GO:0006915 GO:0016651 GO:0046835 GO:0006281 GO:0006259

PANTHER

PTHR23279

Length:

153

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.82844

Exp number, first 60 AAs:

20.81907

Total prob of N-in:

0.92959

POSSIBLE N-term signal

sequence

inside

1 - 12

TMhelix

13 - 32

outside

33 - 153

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree