Silkworm Genome Informatics Database

Gene

KWMTBOMO16577

Annotation

PREDICTED:_zinc_finger_protein_883-like_[Amyelois_transitella]

Location

Bomo_Scaf025(-):274-5555 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.293

CDS

ATGAATGTATGCAGAACTTGTCTTGCGGACAAAACTGACAAGGACATATTTAATGTAAAGATGAATAAAGAGTTTAAAAACAAAACTTTTGTTGACATGATGATATTTTGTCTGGATATAATGGTTGTTAAAAATCCAACCATTACAACAAAACTTTGTGCAAAATGCTACAGAAAAATATTATCATTTCATAAATTTAAATCGCTGGCCATAGAAAATGATATTTATTTAGAAAGTCAGTGTACATCTGCCAAGCACCAGATTCCACTCAATAACAATGAGAATGAGATTGGGCCCACACAACAGTTTAGTATACAAATGGTTGACTGTCTCTCTCCTGAAATGAACAACAAAGATATAATATTCAGAGAACAAGTCAAGACAGAAATGGTATCGGCTCATGATGCAGAAAATGACAGTATCGAGTTAGGAAAATCAGAGCCTCCAGAGTTAGAGTCTGATGATGAATACTTGAGTGTAATTAAAACAATTAAAATGGAGTATGGTATGGATGGTAAAGATGCTAAGATCAAACGTAAAAATGCTACTGAAAGAAAATCAAATTCCAAAAAGATAGATAATCCAAAAAATAATTTAAAAATGATGTGCGAGGAATGCGGAATTACTGTAAAAGATTTAAAAGAGCATATGAGACAACATCTTCCTCCAGACGAGAGACCAAGAGTCAATTGTCACCTTTGTGAGGAAACTTTTTCATCGGCCAATTCAAAATACAAACATGTGAGACGTAAACATATGAACATCAAACAGAATTGTAAAATCTGTAATAAGGCTGTCGCAAACCTGAAAGCGCACATATTAGTGGTGCACAATACGGAATCACTGCCGTTTGAATGTATAGCATGCGGACGCGGGTTCATATCGAAGTCGCGCCTTGACGTTCATATGGCGGTGCACACCAAGGATCGCCCTCATAAATGCTCATTTTGCATTAAACGGTTTAGGACTAAGATTTGCATGCAGCTACACGAGCGACAAGTCCACAAAAAGGAGAAGAATCATCTCTGTCAGTTCTGTTCGAAAACTTTTTTCAAAAAATATCACTTACAAGTGCATATAAGAACTCACACGAAGGAGAAACCGTACGAATGCAGCGAGTGCGGCAAGTGGTTCAGCTCGAAGAACGTGCTGAAGAACCACAAGCTCATACACGAGGACGTGAAGAGATTCGCGTGCACGCTCTGCGATATGTCGTTCATTAGAAACGGGTATAGAAAAATCCTAGATTTCTTAGACAGGCTTATTACAAAAACGATATTTTAA

Protein

MNVCRTCLADKTDKDIFNVKMNKEFKNKTFVDMMIFCLDIMVVKNPTITTKLCAKCYRKILSFHKFKSLAIENDIYLESQCTSAKHQIPLNNNENEIGPTQQFSIQMVDCLSPEMNNKDIIFREQVKTEMVSAHDAENDSIELGKSEPPELESDDEYLSVIKTIKMEYGMDGKDAKIKRKNATERKSNSKKIDNPKNNLKMMCEECGITVKDLKEHMRQHLPPDERPRVNCHLCEETFSSANSKYKHVRRKHMNIKQNCKICNKAVANLKAHILVVHNTESLPFECIACGRGFISKSRLDVHMAVHTKDRPHKCSFCIKRFRTKICMQLHERQVHKKEKNHLCQFCSKTFFKKYHLQVHIRTHTKEKPYECSECGKWFSSKNVLKNHKLIHEDVKRFACTLCDMSFIRNGYRKILDFLDRLITKTIF

Uniprot

A0A3S2NI15 A0A2A4JS95 D0ABA3 A0A212F6L1 A0A194QB05 A0A1E1WLF8 + More
A0A2H1VVV8 A0A0L7KKF4 A0A194QXI5 A0A194PIN9 A0A1W4W962 A0A3Q3ELA7 N6UMG3 A0A2U4B5Q6 A0A2U4B5Z8 F6VWU8 D2A101 D6WN06 A0A3Q4GD39 A0A3S2M357

Pubmed

22118469 26354079 26227816 23537049 15489334 19468303 + More
18362917 19820115 25186727

EMBL

RSAL01000090 RVE48085.1 NWSH01000703 PCG74699.1 FP102341 CBH09298.1 + More
AGBW02010007 OWR49349.1 KQ459232 KPJ02647.1 GDQN01003266 JAT87788.1 ODYU01004452 SOQ44334.1 JTDY01009405 KOB63556.1 KQ461155 KPJ08286.1 KQ459602 KPI93187.1 APGK01026647 KB740635 KB632195 ENN79907.1 ERL89965.1 AC122270 BC098460 AAH98460.1 KQ971338 EFA01603.2 KQ971343 EFA03255.2 RSAL01000051 RVE50218.1

Proteomes

UP000283053 UP000218220 UP000007151 UP000053268 UP000037510 UP000053240 + More
UP000192223 UP000264800 UP000019118 UP000030742 UP000245320 UP000000589 UP000007266 UP000261580

Pfam

PF07776   zf-AD        + More
PF00096   zf-C2H2
PF08366   LLGL
PF01352   KRAB
PF16622   zf-C2H2_11

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR012934   Znf_AD
IPR036322   WD40_repeat_dom_sf
IPR019775   WD40_repeat_CS
IPR001680   WD40_repeat
IPR017986   WD40_repeat_dom
IPR013577   LLGL2
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR000664   Lethal2_giant
IPR001909   KRAB
IPR036051   KRAB_dom_sf
IPR041697   Znf-C2H2_11

SUPFAM

SSF57667   SSF57667        + More
SSF50978   SSF50978
SSF109640   SSF109640

Gene 3D

2.130.10.10

CDD

cd07765 KRAB_A-box

ProteinModelPortal

A0A3S2NI15 A0A2A4JS95 D0ABA3 A0A212F6L1 A0A194QB05 A0A1E1WLF8 + More
A0A2H1VVV8 A0A0L7KKF4 A0A194QXI5 A0A194PIN9 A0A1W4W962 A0A3Q3ELA7 N6UMG3 A0A2U4B5Q6 A0A2U4B5Z8 F6VWU8 D2A101 D6WN06 A0A3Q4GD39 A0A3S2M357

PDB

5WJQ E-value=3.52325e-23, Score=268

KEGG

101741334 no KO assigned | (RefSeq) zinc finger protein 1 homolog

GO

GO:0008270 GO:0003676 GO:0005634 GO:0046872 GO:0006355 GO:0004930 GO:0006915 GO:0016651 GO:0046835 GO:0006281 GO:0006259

Length:

427

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.31557

Exp number, first 60 AAs:

0.31416

Total prob of N-in:

0.03555

outside

1 - 427

Pi

39.995223

Theta

42.38002

Tajima's D

-0.189199

CLR

0.012353

CSRT

0.31688415579221

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree