SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16574
Pre Gene Modal
BGIBMGA009739
Annotation
PREDICTED:_uncharacterized_protein_LOC105842082_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.176
 

Sequence

CDS
ATGCCAGATCGCGACAAGTCACCGGAGGGATCTCTTGTCGAGTACGTAACCGACATCAGAAGTGGACACACCATTCAAAGTAAACGAAATGCTTATAACGATTTTATTCACATCAAACAACTGCCCGTTCCTAGACTGAACAAAAGCGTTGAAAGTGAGCTTGTAAAGGTGTCTGATATAAAAGTCATCAAAGTGGTGAAAGTTGAAGATAATAAGGTAAAATTTTGTTACAAAACATCCTATGTTGATGATTTCAAAGAACTTAACCCGGGATCTAAAAGAGCCAGTGCAAGGAACCAGAGGACTGAAGAATTGCAACATCTGTATAACCAAAAGTTAGATTTATCCGAAAGAAAGAAGAGTGACGTGAAAAGCCTTATAGATGCTGGTTTGATACTCAACTTTTACAATTCCTATTTTGACAGAGTTTTGAACTAG
Protein
MPDRDKSPEGSLVEYVTDIRSGHTIQSKRNAYNDFIHIKQLPVPRLNKSVESELVKVSDIKVIKVVKVEDNKVKFCYKTSYVDDFKELNPGSKRASARNQRTEELQHLYNQKLDLSERKKSDVKSLIDAGLILNFYNSYFDRVLN

Summary

Pfam
PF00400   WD40        + More
PF02138   Beach
Interpro
IPR036322   WD40_repeat_dom_sf        + More
IPR000409   BEACH_dom       
IPR036372   BEACH_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR040416   TMEM181       
IPR012337   RNaseH-like_sf       
SUPFAM
SSF81837   SSF81837        + More
SSF50978   SSF50978       
SSF53098   SSF53098       
Gene 3D

Ontologies

Topology

Length:
145
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01552
Exp number, first 60 AAs:
0
Total prob of N-in:
0.13303
outside
1  -  145
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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