Gene

KWMTBOMO16567

Annotation

PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_[Amyelois_transitella]

Location

Bomo_Scaf018(-):28757-41495      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 1.337

CDS

ATGCTACTGTTAAATGTAAAATTAATCTTGTTTATATGGGAAACTCCGTTTTTTTTTCTGTTCCAGGTGGTAGCTCGTCGCTCCGACCTGAAGTTGATCGTCACGTCAGCCACGATGGATTCGACTAAGTTTTCGACGTTTTTCGGTAACGTGCCGACTTTCACCATCCCCGGCAGGACCTTCCCCGTGGAGACGTTCTTCTCGAAGAACCCGTGCGAGGATTACGTTGACGGAGCTGTCAAACAGGCTTTACAAATTCATCTGCAGCCAGACGAGGGCGACATTCTGATATTCATGCCTGGTCAGGAAGACATCGAAGTTACGTGCGAGGTATTAACAGAAAGACTGGGCGATTTAGACAACGCGCCCCCCCTGACCGTCCTGCCGATATACTCTCAGCTCCCCGCTGACTTGCAGGCGAAGATATTCCAGCGAGCGCCGCCCGGACAGAGGAAGTGTATCGTCGCCACCAATATAGCAGAAACGTCACTAACCGTGGACGGGATCATGTACGTCATAGACTGCGGATATTGTAAGCTGAAGGTTTACAACCCGAGGATCGGTATGGACGCTTTGCAGATATATCCGGTTAGCCAGGCCAACGCCCGGCAGCGGGCGGGCCGAGCCGGGCGTACCGGCCCGGGCAAGGCCTTCTGTCTGTACACGCAGCGGCAGTACCAGCACGAGCTGCTGGCGTCTACTGTGCCGGAGATACAGAGGACGAACCTGGCGAACACCGTACTGTTGCTGAAGTCCTTGGGCGTTGAAGACCTACTGGCCTTCCACTTCATGGATCCCCCACCACAGGACACGATCCTGAACTCGATGTACCAGCTGTGGATCCTGGGCGCGCTGGACGGCACGGGCTCGCTGACGGCGCTCGGGCGGCAGATGGCGGAGTTCCCGCTGGACCCGGCGCAGTGCCACATGCTCATCGTGGCCGCGGACATGGGCTGCAGCGCCGAGGTGCTCATCATCGTGTCGATGCTGTCGGTGCCTTCAGTCTTCTACCGTCCTCAAGGTCGCGAGGAAGAAGCCGACGCAGTCAAAGAGAAATTCCAAGTCCCCGAATCCGATCACCTGACCCTCCTACACTTGTACAACCAGTGGAAATCAAACAACTACTCCAGTCAGTGGTGCACGGAGCACTTCGTTCACGCGAAGGCGATGAGGAAAGTGCGCGAGGTTCGCCAGCAGCTGAAGGACATTCTGCAACAGCAGCGGCTGCCGCTCGTGTCCTGCGGCACCGACTGGGACACCGTCAGGAAATGCATCTGTTCAGGTCCGTAG

Protein

MLLLNVKLILFIWETPFFFLFQVVARRSDLKLIVTSATMDSTKFSTFFGNVPTFTIPGRTFPVETFFSKNPCEDYVDGAVKQALQIHLQPDEGDILIFMPGQEDIEVTCEVLTERLGDLDNAPPLTVLPIYSQLPADLQAKIFQRAPPGQRKCIVATNIAETSLTVDGIMYVIDCGYCKLKVYNPRIGMDALQIYPVSQANARQRAGRAGRTGPGKAFCLYTQRQYQHELLASTVPEIQRTNLANTVLLLKSLGVEDLLAFHFMDPPPQDTILNSMYQLWILGALDGTGSLTALGRQMAEFPLDPAQCHMLIVAADMGCSAEVLIIVSMLSVPSVFYRPQGREEEADAVKEKFQVPESDHLTLLHLYNQWKSNNYSSQWCTEHFVHAKAMRKVREVRQQLKDILQQQRLPLVSCGTDWDTVRKCICSGP

Uniprot

A0A2A4K7G3   A0A212F809   A0A194QQ24   A0A2J7Q8P7   A0A1L8DH54   U4U7F1   + More
A0A224XH31   A0A1W4X3L2   A0A1Y1NAW9   E0VLT3   A0A0A9VWS9   A0A182FLL1   W5JVK7   A0A182MD61   A0A182NB47   A0A182Y8H0   A0A182VTP7   Q7Q4Q1   A0A1W4VUB2   A0A182L037   A0A182IBU1   A0A182V576   A0A1S4GYI5   A0A182P4P2   B4JJA6   A0A182U2E2   A0A182X188   A0A182QLQ7   A0A1S4GZ85   B3NVV4   A0A182JED8   B4MEU2   A0A0K8VII5   A0A0A1X8I2   A0A182RLB0   B4Q2R1   A0A1B0D762   Q9VY54   A0A084W6V2   A0A1I8NLU6   A0A182GP01   A0A1I8MMG7   B4NBY3   Q29GN6   B4GVC8   B0W7R4   W8BTI0   B3N129   A0A1Q3F7K5   A0A0M4EP05   A0A3B0K5V8   A0A182SHR5   Q17KN2   N6TN26   A0A1I8NLU9   A0A336MAT9   A0A2S2QPY9   A0A1B6IRX8   A0A1J1INA1   A0A1A9XKI6   A0A1B0AFC4   A0A2P8YQD4   A0A2H8TP30   J9K217   A0A2S2PF50   L7MEK8   A0A0A1WZ92   A0A2A3E6K5   A0A369S956   A0A0J7L9M7   A0A1Z5KVH8   E9J412   A0A154P7H2   A0A195ERQ9   A0A2R5LAX9   F4WKH7   A0A195BQY3   A0A151XAZ2   A0A195DI32   K7IWW2   A0A158NQL4   A0A1Z5L0P5   A0A026WVY7   A0A139WKF7   E2BAH1   A0A195D3R1   A0A0C9RCK6   A0A087UM57   A0A293MHN9   A0A1E1X344   E1ZZK4   A0A2H1WTX0   A0A2P6KFB4   A0A0L0CFG7   A0A0P6HKN9   A0A164VWR5   A0A0P6G2Q7   V4B2P9   A0A232FCR5   A0A0P5W3D6  

Pubmed

22118469    26354079    23537049    28004739    20566863    25401762    + More
26823975    20920257    23761445    25244985    12364791    20966253    17994087    25830018    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24438588    26483478    25315136    15632085    24495485    17510324    29403074    25576852    30042472    28528879    21282665    21719571    20075255    21347285    24508170    30249741    18362917    19820115    20798317    28503490    26108605    23254933    28648823   

EMBL

NWSH01000052    PCG80177.1    AGBW02009812    OWR49858.1    KQ461185    KPJ07464.1    + More
NEVH01016949    PNF24954.1    GFDF01008367    JAV05717.1    KB631759    ERL85850.1    GFTR01008656    JAW07770.1    GEZM01007689    JAV94993.1    DS235281    EEB14339.1    GBHO01044941    GBRD01003505    GDHC01019435    JAF98662.1    JAG62316.1    JAP99193.1    ADMH02000297    ETN67065.1    AXCM01007720    AAAB01008964    EAA12175.4    APCN01000737    CH916370    EDV99658.1    AXCN02000643    CH954180    EDV47119.1    CH940664    EDW63067.1    GDHF01013637    JAI38677.1    GBXI01007314    JAD06978.1    CM000162    EDX01655.1    AJVK01026680    AE014298    AY058553    AAF48351.2    AAL13782.1    ATLV01020961    KE525310    KFB45946.1    JXUM01077340    KQ563003    KXJ74653.1    CH964239    EDW82342.1    CH379064    EAL32073.2    CH479192    EDW26415.1    DS231855    EDS38208.1    GAMC01009994    JAB96561.1    CH902650    EDV30064.1    GFDL01011536    JAV23509.1    CP012528    ALC49884.1    OUUW01000015    SPP88673.1    CH477222    EAT47272.1    APGK01058767    KB741291    ENN70610.1    UFQS01000316    UFQT01000316    SSX02787.1    SSX23158.1    GGMS01009989    MBY79192.1    GECU01018011    JAS89695.1    CVRI01000056    CRL01699.1    PYGN01000433    PSN46455.1    GFXV01003866    MBW15671.1    ABLF02035589    ABLF02035594    ABLF02035622    GGMR01015448    MBY28067.1    GACK01002767    JAA62267.1    GBXI01010301    JAD03991.1    KZ288349    PBC27393.1    NOWV01000044    RDD43091.1    LBMM01000146    KMR04745.1    GFJQ02007982    JAV98987.1    GL768069    EFZ12430.1    KQ434823    KZC07284.1    KQ982021    KYN30564.1    GGLE01002526    MBY06652.1    GL888199    EGI65315.1    KQ976419    KYM89293.1    KQ982335    KYQ57526.1    KQ980824    KYN12501.1    AAZX01007595    ADTU01023371    GFJQ02006008    GFJQ02004971    JAW00962.1    JAW01999.1    KK107087    QOIP01000001    EZA59856.1    RLU26921.1    KQ971330    KYB28331.1    GL446730    EFN87303.1    KQ976885    KYN07532.1    GBYB01010847    JAG80614.1    KK120525    KFM78446.1    GFWV01014910    MAA39639.1    GFAC01005732    JAT93456.1    GL435386    EFN73387.1    ODYU01011022    SOQ56501.1    MWRG01013534    PRD25022.1    JRES01000474    KNC30985.1    GDIQ01018775    JAN75962.1    LRGB01001361    KZS12737.1    GDIQ01041650    JAN53087.1    KB203854    ESO82809.1    NNAY01000459    OXU28239.1    GDIP01092526    JAM11189.1   

Proteomes

UP000218220    UP000007151    UP000053240    UP000235965    UP000030742    UP000192223    + More
UP000009046    UP000069272    UP000000673    UP000075883    UP000075884    UP000076408    UP000075920    UP000007062    UP000192221    UP000075882    UP000075840    UP000075903    UP000075885    UP000001070    UP000075902    UP000076407    UP000075886    UP000008711    UP000075880    UP000008792    UP000075900    UP000002282    UP000092462    UP000000803    UP000030765    UP000095300    UP000069940    UP000249989    UP000095301    UP000007798    UP000001819    UP000008744    UP000002320    UP000007801    UP000092553    UP000268350    UP000075901    UP000008820    UP000019118    UP000183832    UP000092443    UP000092445    UP000245037    UP000007819    UP000242457    UP000253843    UP000036403    UP000076502    UP000078541    UP000007755    UP000078540    UP000075809    UP000078492    UP000002358    UP000005205    UP000053097    UP000279307    UP000007266    UP000008237    UP000078542    UP000054359    UP000000311    UP000037069    UP000076858    UP000030746    UP000215335   

PRIDE

Q9VY54   

Pfam

PF07717   OB_NTP_bind        + More
PF04408   HA2
PF00271   Helicase_C
PF00270   DEAD
PF13401   AAA_22

Interpro

IPR007502   Helicase-assoc_dom        + More
IPR027417   P-loop_NTPase       
IPR001650   Helicase_C       
IPR011709   DUF1605       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014001   Helicase_ATP-bd       
IPR003593   AAA+_ATPase       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc

ProteinModelPortal

A0A2A4K7G3   A0A212F809   A0A194QQ24   A0A2J7Q8P7   A0A1L8DH54   U4U7F1   + More
A0A224XH31   A0A1W4X3L2   A0A1Y1NAW9   E0VLT3   A0A0A9VWS9   A0A182FLL1   W5JVK7   A0A182MD61   A0A182NB47   A0A182Y8H0   A0A182VTP7   Q7Q4Q1   A0A1W4VUB2   A0A182L037   A0A182IBU1   A0A182V576   A0A1S4GYI5   A0A182P4P2   B4JJA6   A0A182U2E2   A0A182X188   A0A182QLQ7   A0A1S4GZ85   B3NVV4   A0A182JED8   B4MEU2   A0A0K8VII5   A0A0A1X8I2   A0A182RLB0   B4Q2R1   A0A1B0D762   Q9VY54   A0A084W6V2   A0A1I8NLU6   A0A182GP01   A0A1I8MMG7   B4NBY3   Q29GN6   B4GVC8   B0W7R4   W8BTI0   B3N129   A0A1Q3F7K5   A0A0M4EP05   A0A3B0K5V8   A0A182SHR5   Q17KN2   N6TN26   A0A1I8NLU9   A0A336MAT9   A0A2S2QPY9   A0A1B6IRX8   A0A1J1INA1   A0A1A9XKI6   A0A1B0AFC4   A0A2P8YQD4   A0A2H8TP30   J9K217   A0A2S2PF50   L7MEK8   A0A0A1WZ92   A0A2A3E6K5   A0A369S956   A0A0J7L9M7   A0A1Z5KVH8   E9J412   A0A154P7H2   A0A195ERQ9   A0A2R5LAX9   F4WKH7   A0A195BQY3   A0A151XAZ2   A0A195DI32   K7IWW2   A0A158NQL4   A0A1Z5L0P5   A0A026WVY7   A0A139WKF7   E2BAH1   A0A195D3R1   A0A0C9RCK6   A0A087UM57   A0A293MHN9   A0A1E1X344   E1ZZK4   A0A2H1WTX0   A0A2P6KFB4   A0A0L0CFG7   A0A0P6HKN9   A0A164VWR5   A0A0P6G2Q7   V4B2P9   A0A232FCR5   A0A0P5W3D6  

PDB

5YZG     E-value=0,     Score=1653

KEGG

101737321    K12815 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:3.6.4.13] | (RefSeq) pre-

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0004386   GO:0003676   GO:0003723   GO:0034459   GO:0000398   GO:0016887   GO:0000381   GO:0005681   GO:0004004   GO:0008233   GO:0007186   GO:0016500   GO:0004930   GO:0006915   GO:0016651   GO:0046835   GO:0006281   GO:0006259  

Length:

429

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

7.40448

Exp number, first 60 AAs:

6.92793

Total prob of N-in:

0.31085

outside

1  -  429

 

 

Pi

19.781155

Theta

19.503407

Tajima's D

-1.498322

CLR

0.01655

CSRT

0.0602969851507425

Interpretation

Uncertain