Gene

KWMTBOMO16565

Annotation

PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16-like_[Bombyx_mori]

Location

Bomo_Scaf018(-):19158-23945      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.595 Mitochondrial   Reliability : 1.852

CDS

ATGACAAAGGCTTACTTCCAGCAGGCGGCGCGGCTGAAGGGCATCGGCGAGTACGTGAACTGCCGCACCGGCATGCCGTGCCACCTGCACCCCACCTCGGCGCTGTTCGGGCTGGGCTGCAGCCCCGACTACGTGGTGTACCACGAGCTCACCATGACGGCGCGCGAGTACATGCACTGCGTCACCGCCGTGGACGCGCGCTGGCTGGCCGAGCTGGGGCCCATGTTCTTCTCCGTCAAGGAGACCGGCAAATCGAATCGAGACAAGCGTAAAGAAGCAGCGGTCCACCTCCAACGCATGGAGGAAGAGATGAAGGAGGCCGAGGCCAAAATGGCAGAAGATCGCAAGAAGAAAGACGAAGACGTTCCCGTGAAGCAGGAGGTGGCCACCCCGGGGCTGGGCACCCCGCGCCGCACACCGCAGCGCCTGGGCCTGTAG

Protein

MTKAYFQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELGPMFFSVKETGKSNRDKRKEAAVHLQRMEEEMKEAEAKMAEDRKKKDEDVPVKQEVATPGLGTPRRTPQRLGL

Uniprot

A0A194QQ24   A0A2H1WTX0   A0A2A4K7G3   A0A212F809   A0A194QFB1   A0A0L0CFG7   + More
A0A0M4EP05   Q9VY50   A0A1L8DH54   B4NBY3   A0A1I8NLU8   A0A1I8MMG7   A0A1I8NLU6   T1P960   A0A1I8NLU9   B4JJA6   B4L3F7   Q9VY54   W8B600   B3NVV4   W8BTI0   B4R4N0   A0A0K8VII5   A0A0A1X8I2   A0A139WKF7   A0A0A1WZ92   B4MEU2   A0A1W4VUB2   B4Q2R1   W5JVK7   Q17KN2   B3N129   A0A182FLL1   A0A1Q3F7K5   A0A1W4X3L2   A0A1B0D762   A0A182SHR5   B0W7R4   A0A1A9VNH4   A0A1B0BTZ1   A0A1A9WID0   A0A1A9XKI6   A0A1B0AFC4   A0A1B6KNP3   A0A1B6C7F5   A0A182P4P2   A0A182Y8H0   A0A182MD61   A0A182JED8   A0A182VTP7   A0A182RLB0   A0A182U2E2   A0A182L037   A0A182NB47   A0A182V576   Q7Q4Q1   A0A1B6EWT2   A0A1S4GYI5   A0A1B6G162   A0A182IBU1   A0A084W6V2   A0A182QLQ7   A0A1S4GZ85   A0A182X188   A0A182GP01   A0A1J1INA1   N6TN26   A0A2J7Q8P7   U4U7F1   E0VLT3   A0A2P8YQD4   A0A1Y1NAW9   A0A088AJI9   A0A2A3E6K5   A0A0M8ZMK4   A0A0L7REB3   A0A195BQY3   A0A158NQL4   A0A151XAZ2   E9J412   A0A0J7L9M7   A0A195ERQ9   A0A195DI32   E1ZZK4   A0A195D3R1   F4WKH7   E2BAH1   A0A232FCR5   K7IWW2   A0A0A9VWS9   A0A026WVY7   A0A0C9RCK6   A0A1D2N344   T1I225   A0A131Z1J9   A0A224XH31   A0A2B4SVA6   A0A224YZH5  

Pubmed

26354079    22118469    26108605    10731132    12537568    12537572    + More
12537573    12537574    16110336    17569856    17569867    17994087    25315136    26109357    26109356    24495485    25830018    18362917    19820115    17550304    20920257    23761445    17510324    25244985    20966253    12364791    24438588    26483478    23537049    20566863    29403074    28004739    21347285    21282665    20798317    21719571    28648823    20075255    25401762    26823975    24508170    30249741    27289101    26830274    28797301   

EMBL

KQ461185    KPJ07464.1    ODYU01011022    SOQ56501.1    NWSH01000052    PCG80177.1    + More
AGBW02009812    OWR49858.1    KQ459252    KPJ02156.1    JRES01000474    KNC30985.1    CP012528    ALC49884.1    AE014298    AAF48355.2    GFDF01008367    JAV05717.1    CH964239    EDW82342.1    KA645252    AFP59881.1    CH916370    EDV99658.1    CH933810    EDW07085.2    AY058553    AAF48351.2    AAL13782.1    GAMC01009995    JAB96560.1    CH954180    EDV47119.1    GAMC01009994    JAB96561.1    CM000366    EDX17884.1    GDHF01013637    JAI38677.1    GBXI01007314    JAD06978.1    KQ971330    KYB28331.1    GBXI01010301    JAD03991.1    CH940664    EDW63067.1    CM000162    EDX01655.1    ADMH02000297    ETN67065.1    CH477222    EAT47272.1    CH902650    EDV30064.1    GFDL01011536    JAV23509.1    AJVK01026680    DS231855    EDS38208.1    JXJN01020416    GEBQ01027153    JAT12824.1    GEDC01027897    JAS09401.1    AXCM01007720    AAAB01008964    EAA12175.4    GECZ01027305    JAS42464.1    GECZ01013582    JAS56187.1    APCN01000737    ATLV01020961    KE525310    KFB45946.1    AXCN02000643    JXUM01077340    KQ563003    KXJ74653.1    CVRI01000056    CRL01699.1    APGK01058767    KB741291    ENN70610.1    NEVH01016949    PNF24954.1    KB631759    ERL85850.1    DS235281    EEB14339.1    PYGN01000433    PSN46455.1    GEZM01007689    JAV94993.1    KZ288349    PBC27393.1    KQ436240    KOX67360.1    KQ414612    KOC69165.1    KQ976419    KYM89293.1    ADTU01023371    KQ982335    KYQ57526.1    GL768069    EFZ12430.1    LBMM01000146    KMR04745.1    KQ982021    KYN30564.1    KQ980824    KYN12501.1    GL435386    EFN73387.1    KQ976885    KYN07532.1    GL888199    EGI65315.1    GL446730    EFN87303.1    NNAY01000459    OXU28239.1    AAZX01007595    GBHO01044941    GBRD01003505    GDHC01019435    JAF98662.1    JAG62316.1    JAP99193.1    KK107087    QOIP01000001    EZA59856.1    RLU26921.1    GBYB01010847    JAG80614.1    LJIJ01000279    ODM99474.1    ACPB03006723    GEDV01003942    JAP84615.1    GFTR01008656    JAW07770.1    LSMT01000015    PFX33109.1    GFPF01009963    MAA21109.1   

Proteomes

UP000053240    UP000218220    UP000007151    UP000053268    UP000037069    UP000092553    + More
UP000000803    UP000007798    UP000095300    UP000095301    UP000001070    UP000009192    UP000008711    UP000000304    UP000007266    UP000008792    UP000192221    UP000002282    UP000000673    UP000008820    UP000007801    UP000069272    UP000192223    UP000092462    UP000075901    UP000002320    UP000078200    UP000092460    UP000091820    UP000092443    UP000092445    UP000075885    UP000076408    UP000075883    UP000075880    UP000075920    UP000075900    UP000075902    UP000075882    UP000075884    UP000075903    UP000007062    UP000075840    UP000030765    UP000075886    UP000076407    UP000069940    UP000249989    UP000183832    UP000019118    UP000235965    UP000030742    UP000009046    UP000245037    UP000005203    UP000242457    UP000053105    UP000053825    UP000078540    UP000005205    UP000075809    UP000036403    UP000078541    UP000078492    UP000000311    UP000078542    UP000007755    UP000008237    UP000215335    UP000002358    UP000053097    UP000279307    UP000094527    UP000015103    UP000225706   

PRIDE

Q9VY50    Q9VY54   

Pfam

PF07717   OB_NTP_bind        + More
PF00271   Helicase_C
PF04408   HA2
PF00270   DEAD
PF13401   AAA_22

Interpro

IPR027417   P-loop_NTPase        + More
IPR007502   Helicase-assoc_dom       
IPR011709   DUF1605       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR042035   DEAH_win-hel_dom       
IPR003593   AAA+_ATPase       

SUPFAM

SSF52540   SSF52540       

Gene 3D

1.10.10.2130    

CDD

cd00079  HELICc

ProteinModelPortal

A0A194QQ24   A0A2H1WTX0   A0A2A4K7G3   A0A212F809   A0A194QFB1   A0A0L0CFG7   + More
A0A0M4EP05   Q9VY50   A0A1L8DH54   B4NBY3   A0A1I8NLU8   A0A1I8MMG7   A0A1I8NLU6   T1P960   A0A1I8NLU9   B4JJA6   B4L3F7   Q9VY54   W8B600   B3NVV4   W8BTI0   B4R4N0   A0A0K8VII5   A0A0A1X8I2   A0A139WKF7   A0A0A1WZ92   B4MEU2   A0A1W4VUB2   B4Q2R1   W5JVK7   Q17KN2   B3N129   A0A182FLL1   A0A1Q3F7K5   A0A1W4X3L2   A0A1B0D762   A0A182SHR5   B0W7R4   A0A1A9VNH4   A0A1B0BTZ1   A0A1A9WID0   A0A1A9XKI6   A0A1B0AFC4   A0A1B6KNP3   A0A1B6C7F5   A0A182P4P2   A0A182Y8H0   A0A182MD61   A0A182JED8   A0A182VTP7   A0A182RLB0   A0A182U2E2   A0A182L037   A0A182NB47   A0A182V576   Q7Q4Q1   A0A1B6EWT2   A0A1S4GYI5   A0A1B6G162   A0A182IBU1   A0A084W6V2   A0A182QLQ7   A0A1S4GZ85   A0A182X188   A0A182GP01   A0A1J1INA1   N6TN26   A0A2J7Q8P7   U4U7F1   E0VLT3   A0A2P8YQD4   A0A1Y1NAW9   A0A088AJI9   A0A2A3E6K5   A0A0M8ZMK4   A0A0L7REB3   A0A195BQY3   A0A158NQL4   A0A151XAZ2   E9J412   A0A0J7L9M7   A0A195ERQ9   A0A195DI32   E1ZZK4   A0A195D3R1   F4WKH7   E2BAH1   A0A232FCR5   K7IWW2   A0A0A9VWS9   A0A026WVY7   A0A0C9RCK6   A0A1D2N344   T1I225   A0A131Z1J9   A0A224XH31   A0A2B4SVA6   A0A224YZH5  

PDB

5YZG     E-value=2.68981e-40,     Score=409

KEGG

101745750    no KO assigned | (RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 pseudogene

GO

GO:0005524   GO:0004386   GO:0004004   GO:0005681   GO:0000381   GO:0000398   GO:0003676   GO:0016887   GO:0034459   GO:0003723  

Length:

145

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05751

Exp number, first 60 AAs:

0.0529

Total prob of N-in:

0.38352

outside

1  -  145

 

 

Pi

11.349496

Theta

15.221372

Tajima's D

-2.032501

CLR

0

CSRT

0.0112494375281236

Interpretation

Uncertain