SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16562  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000883
Annotation
PREDICTED:_lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Bombyx_mori]
Transcription factor
Location in the cell
Extracellular   Reliability : 3.485
 

Sequence

CDS
ATGGCCAATGTTGAATATAAAGCAGATTTGTCTGGCACACACTTCGTACCGCCGCATCAGAACCCGCCACCGTACGTCACCCAACCACAACCAGGAATATATCCTGCATATCCTGCCGTACCTCCTCAACAGGTCGTGGCAGTCGTACCAGTAGTAAGGCAAATGGGACCTGATCCTTCACATTATACATGTCCGTCTTGTAATACGGCCATCGTCACTAGAGTAGAACGTGTTTCCACGACAAAGACACATCTGTTTGCTGCTCTTCTTTGCTTAATAGGTTGTTGGCCATGCGTTTGCATTCCTTACTGCACGAATAGCTGCCAAAATGCTGAGCATTATTGCCCGAACTGCAGCGCGTACATCGGAAACTACAGCAGTTAA
Protein
MANVEYKADLSGTHFVPPHQNPPPYVTQPQPGIYPAYPAVPPQQVVAVVPVVRQMGPDPSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYIGNYSS

Summary

Pfam
PF10601   zf-LITAF-like
Interpro
IPR006629   LITAF        + More
IPR037519   LITAF_fam       

Ontologies

GO

Topology

Length:
127
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
11.97105
Exp number, first 60 AAs:
0.01745
Total prob of N-in:
0.52736
outside
1  -  127
 
 

Population Genetic Test Statistics

Pi
13.178895
Theta
17.463224
Tajima's D
-1.322744
CLR
0.048321
CSRT
0.0831958402079896
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 KLDDLLADFPEAR 100.00 4e-13
28556443 ADLSGTHFVPPHQNPPPYVTQPQPGIYPAYPAVPPQQVVAVVPVVR 100.00 2e-09
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