SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16561
Pre Gene Modal
BGIBMGA000886
Annotation
PREDICTED:_lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Bombyx_mori]
Transcription factor
Location in the cell
Extracellular   Reliability : 3.228
 

Sequence

CDS
ATGGCCCATAATGAACAGAAAACCGATTTGTCTGGCGTGGGCTACGCACCGCCTCCACAAAATCCGCCTCCGTACAATAACCAGACACAGCCAGGTCTATACCCGGCCGTTCCTTCCGTCGCCCCCGCGCCCCCCCAGCAGTTCGTTACAGTTGTCCCGGCACAACAAATGGGCCCTGAGCCCACGAACACTAGCTGCCCTTCATGCAGTGCGGCAATCGTCACCAGAGTAGATCACGTGCCAGTGACTAAAACCCACCTGTTTGCTTTGCTTCTTTGCCTAATAGGTTGTTGCCCATGTGCTTGTATCCCTTACTGCACGGACTCCTGCAAAGATGCAAACCATTACTGTCCGAATTGCAACGCGTACATTGGAAGCTACAATCGCTAA
Protein
MAHNEQKTDLSGVGYAPPPQNPPPYNNQTQPGLYPAVPSVAPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPYCTDSCKDANHYCPNCNAYIGSYNR

Summary

Pfam
PF10601   zf-LITAF-like
Interpro
IPR037519   LITAF_fam        + More
IPR006629   LITAF       

Ontologies

GO

Topology

Length:
129
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
12.14893
Exp number, first 60 AAs:
0.00426
Total prob of N-in:
0.50417
outside
1  -  129
 
 

Population Genetic Test Statistics

Pi
4.553014
Theta
16.413963
Tajima's D
-2.119064
CLR
0.025932
CSRT
0.00899955002249887
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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