SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16559  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002359
Annotation
Zinc_finger_DNA_binding_protein_[Operophtera_brumata]
Location in the cell
Nuclear   Reliability : 4.231
 

Sequence

CDS
ATGCATTGTGAGGGTTGCACTACAAAATTATGCAAGGAAAAATTTAAGTGCAATAAATGTGCTTCAGAATACTGCTTTGATTGCGTGAATATTGCTCCCGCTTCAAGGAAACAATTAAGCGCTAAGCAAATTGCGTCTTTAAGCTGTCCTTCTTGTCAAAACGTTACGAAACGTAAAACTAACTGCAATACTCCGATCCACAAACGTCCTGATTTGAATGACACTGTCAATGCTTCTTCCTCTTTTACTTCCTACGACTCGACTGCAGTGGATGCTTCCTCGGACATGGAATCGATCAGCGGACAAGTGACCTTGGAGAGCATAGGGCAGCTTCTCGATATGAAACTAGCGCCTGGCTCTTCGTTCATGACTCATTTGCGATCCTCGCTTAGGAAGGATATCACAGAAATGGTGTCTCAGGAGGTTAATCGTGCTGTTGAGGGCTTGAGAGTGGATTTCTCGCAAACGACGGATTTCATGTCTGCTGAGCAGAAAAGTATCCGATCCAAAATTTGTGATAAGGAAAAAGAAATCGAGTTACTCAGACTACAACTTAATAAAACCGGGGAATCTTTACACAGGCTTCAGAATCGAGTTTCTATGGTGGAGAAAATTTCTCGAGACCTCAATATTGAGATTCACGAAGTTCCGGAGAATAATCATGAGAACCTTAATCACTTATTTAAAAAACTTTGTGAGTTTTTGAGTGTCAACATATCTGATGCAGATATCAAATCTTGTCGTCGAGTTGCTAAAATGAATCCTGACTCGAGAAGGCCAAGAAATATACTAATCTCACTGTCATCCCAGCGTCTTCGTGATGAGGTTCTATCTGCGGTTACTAGGTATAACAAGTCTAATTCAAAAGATAAGCTTGGAACCGCTCAAGTCGGCTTAACATGCGCGGTTTCAAGGATTTATGTATCTGAGCATCTTTCTCCTGAGGCTAAGGAACTTCATAGCATGGCTAGAAAACTGAGCAAAGAGAAAAATTATAAATTTGTTTGGGTTCGTTTTGGTCAAATTTATATTCGAAAGGACGAGAAATGTCCCGCAGTTCATATTAAAAATATTGAAATTATTAATAAACTGAGAAACGAGTAA
Protein
MHCEGCTTKLCKEKFKCNKCASEYCFDCVNIAPASRKQLSAKQIASLSCPSCQNVTKRKTNCNTPIHKRPDLNDTVNASSSFTSYDSTAVDASSDMESISGQVTLESIGQLLDMKLAPGSSFMTHLRSSLRKDITEMVSQEVNRAVEGLRVDFSQTTDFMSAEQKSIRSKICDKEKEIELLRLQLNKTGESLHRLQNRVSMVEKISRDLNIEIHEVPENNHENLNHLFKKLCEFLSVNISDADIKSCRRVAKMNPDSRRPRNILISLSSQRLRDEVLSAVTRYNKSNSKDKLGTAQVGLTCAVSRIYVSEHLSPEAKELHSMARKLSKEKNYKFVWVRFGQIYIRKDEKCPAVHIKNIEIINKLRNE

Summary

EMBL
JTDY01013334    JTDY01001687    KOB52155.1    KOB73157.1    JTDY01000136    KOB78669.1    + More
ODYU01007128    SOQ49629.1    KQ459054    KPJ03878.1    NWSH01005418    PCG64228.1    JTDY01012405    KOB52279.1    JTDY01010989    KOB57787.1    JTDY01007401    KOB65231.1    JTDY01001361    KOB74078.1    NWSH01006948    PCG63178.1    JTDY01003535    KOB69383.1    JTDY01001411    KOB73935.1    ODYU01006462    SOQ48321.1    NWSH01007563    PCG62908.1    NWSH01002032    PCG69366.1    JTDY01014577    KOB52017.1    NWSH01007173    PCG63054.1    JTDY01003264    KOB69846.1    ODYU01007238    SOQ49844.1    ODYU01000349    SOQ34960.1    JTDY01001455    KOB73826.1    NWSH01002191    PCG68944.1    JTDY01015045    KOB51976.1    KOB57786.1    KZ149914    PZC78000.1    JTDY01005451    KOB66988.1    NWSH01004298    PCG65247.1    KZ150018    PZC74943.1    NWSH01005479    PCG64170.1    ODYU01002971    SOQ41143.1    ODYU01012701    SOQ59142.1    ODYU01012049    SOQ58146.1    ODYU01011375    SOQ57082.1    JTDY01004426    KOB68173.1    GEZM01097808    JAV54094.1    JTDY01002226    KOB71853.1    NWSH01003975    PCG65605.1    KZ150150    PZC72841.1    BABH01013843    NWSH01005158    PCG64392.1    ODYU01008832    SOQ52780.1    JTDY01000093    KOB78914.1   
Pfam
PF03258   Baculo_FP        + More
PF00628   PHD
PF14529   Exo_endo_phos_2
Interpro
IPR004941   Baculo_FP        + More
IPR001965   Znf_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR019787   Znf_PHD-finger       
IPR011011   Znf_FYVE_PHD       
IPR019786   Zinc_finger_PHD-type_CS       
IPR004244   Transposase_22       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR001841   Znf_RING       
IPR002219   PE/DAG-bd       
SUPFAM
SSF57903   SSF57903        + More
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
367
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00217
Exp number, first 60 AAs:
0.00016
Total prob of N-in:
0.02593
outside
1  -  367
 
 

Population Genetic Test Statistics

Pi
20.054466
Theta
29.713994
Tajima's D
-0.890102
CLR
0
CSRT
0.15739213039348
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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