Gene

KWMTBOMO16553  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004596

Annotation

PREDICTED:_Na(+)/H(+)_exchange_regulatory_cofactor_NHE-RF1_[Papilio_polytes]

Location

Bomo_Scaf013(-):51793-52375      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.47

CDS

ATGTCCGCGAACGGGTCGGCGGCCATCGAGCCACGACTCTGCCACGTGCGGAAGACGCCAGACTTCGACGGCTACGGATTTAATTTGCACGCAGAAAAAGGCAAACCCGGTCAGTACATCGGTAAGGTTGACGATGGCTCTCCGGCAGAGACCGCTGGCTTAAAACGCGGCGACCGCATCCTCGAAGTGAACGGCCACAGTATTGCCGGCGAGACCCACAAGCAAGTGGTGGCTCGCATCAAGGAGCGGCCCGATGACGCCGAGCTGCTGGTGATAGCACCGGCCCGGGGGACCAGATGCCCGATTTGGACGTGCCGGTGCCGGAAAAGACCCCTCCGCCTAGCGAAGCGCCCCGGGACAGTCCGTCGCCGACCGAACCTCCTAAGCTGA

Protein

MSANGSAAIEPRLCHVRKTPDFDGYGFNLHAEKGKPGQYIGKVDDGSPAETAGLKRGDRILEVNGHSIAGETHKQVVARIKERPDDAELLVIAPARGTRCPIWTCRCRKRPLRLAKRPGTVRRRPNLLS

Uniprot

H9J506   A0A3S2NPD1   A0A212F5U4   A0A2H1W8V1   A0A0N1IPZ4   A0A0N1IN07   + More
A0A0L7L0T2   S4P182   N6TGH6   A0A084W4G7   A0A182YBR7   A0A2M4AUS0   A0A2M4AE36   A0A182FU83   A0A2M4BVP4   A0A2M4CT35   A0A2M4CRQ1   A0A2M4CRU3   A0A2M4CRN1   T1DFW4   A0A2M4BV76   A0A182ISA4   A0A182W272   A0A1Q3FH24   A0A1Q3FGQ8   B0XG18   A0A1Q3FH00   A0A1Q3FH40   A0A1Q3FGV6   A0A1Q3FGY7   A0A1Q3FHA8   A0A1Q3FGU3   A0A1Q3FGX6   A0A1Q3FH74   A0A182QAE0   A0A2M4AYF2   A0A2M4AC94   Q16K31   A0A2M4ACY0   A0A182XFR7   A0A1S4H843   A0A182HHT4   A0A182RY32   A0A182V3M0   Q7PV46   A0A1J1J6Q6   A0A1B6ITI6   A0A1B6H1L5   A0A182N9R2   E0W2S9   A0A1L8DKL0   V4B346   A0A1L8DKP0   R4WU03   A0A0N7ZBN2  

Pubmed

19121390    22118469    26354079    26227816    23622113    23537049    + More
24438588    25244985    17510324    12364791    20566863    23254933    23691247   

EMBL

BABH01025768    RSAL01000017    RVE52892.1    AGBW02010136    OWR49098.1    ODYU01006767    + More
SOQ48914.1    KQ460077    KPJ17854.1    KQ459444    KPJ00947.1    JTDY01003774    KOB69025.1    GAIX01009026    JAA83534.1    APGK01039170    KB740967    KB632399    ENN76883.1    ERL94629.1    ATLV01020332    KE525298    KFB45111.1    GGFK01011203    MBW44524.1    GGFK01005651    MBW38972.1    GGFJ01007860    MBW57001.1    GGFL01003820    MBW67998.1    GGFL01003819    MBW67997.1    GGFL01003817    MBW67995.1    GGFL01003818    MBW67996.1    GAMD01002996    JAA98594.1    GGFJ01007845    MBW56986.1    GFDL01008210    JAV26835.1    GFDL01008305    JAV26740.1    DS232981    EDS27176.1    GFDL01008262    JAV26783.1    GFDL01008196    JAV26849.1    GFDL01008235    JAV26810.1    GFDL01008224    JAV26821.1    GFDL01008121    JAV26924.1    GFDL01008296    JAV26749.1    GFDL01008238    JAV26807.1    GFDL01008139    JAV26906.1    AXCN02001804    GGFK01012454    MBW45775.1    GGFK01005080    MBW38401.1    CH477980    EAT34642.1    GGFK01005289    MBW38610.1    AAAB01008986    APCN01002441    EAA00462.5    CVRI01000074    CRL08101.1    GECU01017455    JAS90251.1    GECZ01026505    GECZ01018785    GECZ01008477    GECZ01003178    GECZ01003031    GECZ01001208    JAS43264.1    JAS50984.1    JAS61292.1    JAS66591.1    JAS66738.1    JAS68561.1    DS235879    EEB19935.1    GFDF01007071    JAV07013.1    KB199652    ESP04688.1    GFDF01007072    JAV07012.1    AK418192    BAN21407.1    GDRN01080866    JAI62120.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000019118    UP000030742    UP000030765    UP000076408    UP000069272    UP000075880    UP000075920    UP000002320    UP000075886    UP000008820    UP000076407    UP000075840    UP000075900    UP000075903    UP000007062    UP000183832    UP000075884    UP000009046    UP000030746   

PRIDE

H9J506   

Pfam

PF17820   PDZ_6        + More
PF00595   PDZ

Interpro

IPR041489   PDZ_6        + More
IPR001478   PDZ       
IPR036034   PDZ_sf       

SUPFAM

SSF50156   SSF50156       

ProteinModelPortal

H9J506   A0A3S2NPD1   A0A212F5U4   A0A2H1W8V1   A0A0N1IPZ4   A0A0N1IN07   + More
A0A0L7L0T2   S4P182   N6TGH6   A0A084W4G7   A0A182YBR7   A0A2M4AUS0   A0A2M4AE36   A0A182FU83   A0A2M4BVP4   A0A2M4CT35   A0A2M4CRQ1   A0A2M4CRU3   A0A2M4CRN1   T1DFW4   A0A2M4BV76   A0A182ISA4   A0A182W272   A0A1Q3FH24   A0A1Q3FGQ8   B0XG18   A0A1Q3FH00   A0A1Q3FH40   A0A1Q3FGV6   A0A1Q3FGY7   A0A1Q3FHA8   A0A1Q3FGU3   A0A1Q3FGX6   A0A1Q3FH74   A0A182QAE0   A0A2M4AYF2   A0A2M4AC94   Q16K31   A0A2M4ACY0   A0A182XFR7   A0A1S4H843   A0A182HHT4   A0A182RY32   A0A182V3M0   Q7PV46   A0A1J1J6Q6   A0A1B6ITI6   A0A1B6H1L5   A0A182N9R2   E0W2S9   A0A1L8DKL0   V4B346   A0A1L8DKP0   R4WU03   A0A0N7ZBN2  

PDB

2HE4     E-value=1.37333e-20,     Score=239

KEGG

101744398    no KO assigned | (RefSeq) Na(+)/H(+) exchange regulatory cofactor NHE-RF1

GO

GO:0005515   GO:0006508   GO:0006468   GO:0016787   GO:0005622   GO:0006915   GO:0016651   GO:0046835   GO:0006281   GO:0006259  

Length:

129

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00015

Exp number, first 60 AAs:

0

Total prob of N-in:

0.16653

outside

1  -  129

 

 

Pi

24.81665

Theta

33.562787

Tajima's D

-0.761407

CLR

0

CSRT

0.184490775461227

Interpretation

Uncertain