SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16553  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004596
Annotation
PREDICTED:_Na(+)/H(+)_exchange_regulatory_cofactor_NHE-RF1_[Papilio_polytes]
Location in the cell
Nuclear   Reliability : 2.47
 

Sequence

CDS
ATGTCCGCGAACGGGTCGGCGGCCATCGAGCCACGACTCTGCCACGTGCGGAAGACGCCAGACTTCGACGGCTACGGATTTAATTTGCACGCAGAAAAAGGCAAACCCGGTCAGTACATCGGTAAGGTTGACGATGGCTCTCCGGCAGAGACCGCTGGCTTAAAACGCGGCGACCGCATCCTCGAAGTGAACGGCCACAGTATTGCCGGCGAGACCCACAAGCAAGTGGTGGCTCGCATCAAGGAGCGGCCCGATGACGCCGAGCTGCTGGTGATAGCACCGGCCCGGGGGACCAGATGCCCGATTTGGACGTGCCGGTGCCGGAAAAGACCCCTCCGCCTAGCGAAGCGCCCCGGGACAGTCCGTCGCCGACCGAACCTCCTAAGCTGA
Protein
MSANGSAAIEPRLCHVRKTPDFDGYGFNLHAEKGKPGQYIGKVDDGSPAETAGLKRGDRILEVNGHSIAGETHKQVVARIKERPDDAELLVIAPARGTRCPIWTCRCRKRPLRLAKRPGTVRRRPNLLS

Summary

EMBL
BABH01025768    RSAL01000017    RVE52892.1    AGBW02010136    OWR49098.1    ODYU01006767    + More
SOQ48914.1    KQ460077    KPJ17854.1    KQ459444    KPJ00947.1    JTDY01003774    KOB69025.1    GAIX01009026    JAA83534.1    APGK01039170    KB740967    KB632399    ENN76883.1    ERL94629.1    ATLV01020332    KE525298    KFB45111.1    GGFK01011203    MBW44524.1    GGFK01005651    MBW38972.1    GGFJ01007860    MBW57001.1    GGFL01003820    MBW67998.1    GGFL01003819    MBW67997.1    GGFL01003817    MBW67995.1    GGFL01003818    MBW67996.1    GAMD01002996    JAA98594.1    GGFJ01007845    MBW56986.1    GFDL01008210    JAV26835.1    GFDL01008305    JAV26740.1    DS232981    EDS27176.1    GFDL01008262    JAV26783.1    GFDL01008196    JAV26849.1    GFDL01008235    JAV26810.1    GFDL01008224    JAV26821.1    GFDL01008121    JAV26924.1    GFDL01008296    JAV26749.1    GFDL01008238    JAV26807.1    GFDL01008139    JAV26906.1    AXCN02001804    GGFK01012454    MBW45775.1    GGFK01005080    MBW38401.1    CH477980    EAT34642.1    GGFK01005289    MBW38610.1    AAAB01008986    APCN01002441    EAA00462.5    CVRI01000074    CRL08101.1    GECU01017455    JAS90251.1    GECZ01026505    GECZ01018785    GECZ01008477    GECZ01003178    GECZ01003031    GECZ01001208    JAS43264.1    JAS50984.1    JAS61292.1    JAS66591.1    JAS66738.1    JAS68561.1    DS235879    EEB19935.1    GFDF01007071    JAV07013.1    KB199652    ESP04688.1    GFDF01007072    JAV07012.1    AK418192    BAN21407.1    GDRN01080866    JAI62120.1   
Pfam
PF17820   PDZ_6        + More
PF00595   PDZ
Interpro
IPR041489   PDZ_6        + More
IPR001478   PDZ       
IPR036034   PDZ_sf       
SUPFAM
SSF50156   SSF50156       
PDB
2HE4     E-value=1.37333e-20,     Score=239

Ontologies

Topology

Length:
129
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00015
Exp number, first 60 AAs:
0
Total prob of N-in:
0.16653
outside
1  -  129
 
 

Population Genetic Test Statistics

Pi
24.81665
Theta
33.562787
Tajima's D
-0.761407
CLR
0
CSRT
0.184490775461227
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 VDDGSPAETAGLK 100.00 0.016
28556443 LNLQMTAAEMR 100.00 0.016
28556443 FLEVVKDK 100.00 0.016
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号