SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16549
Pre Gene Modal
BGIBMGA008526
Annotation
PREDICTED:_uncharacterized_protein_LOC105841662_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.653 Nuclear   Reliability : 2.078
 

Sequence

CDS
ATGTTTCGTACACCAACAACAACTGGCGCTGTCAAAAAATCCACTACTCCCAGCCCCGCTACTTCACCTGCGGCAGTATCGGAAGCTGCCAGGACTTTTATCAAGAGACCGGAAACGAAAAGAAGGTCGCTTGATAATATGGACCTGTACAGAAGGCAGCAGCAGAACTACGCGGAGATACCGAGCGAAAAACTACTCCTGGAAGTAATGAAGACATTTGAGGATATACCCTCAAAGGTTCAGCAGTACCCTCAGATGAGACGGGACATCAAGTCCTTCCTGGAGGTACAATCGGACAGATGTATCCGCATGCTTTTTGAGTTGAGTAAGCGGATGAAGACTCTGGAAGCAGCAGCGCCCGAAACTAGTACACAGACAGCAGCTTTATTTTCTGACAAAGAACAAAAACTGCTGGAAAAACTGGCAGAGATGGAAAACGTAATAACCACGCGGATTAGTCAAACGGAAGCCAACCTGAAGAAAGAAGTAGCGGAACTTAACTCAACAAACGACGATCGAGGCGCTAACATCGTGGAATACGTTTACAACAGATTTGAGGAGGCCAAGGTTGCAATAGGTAAATCGACCGAGGGGGTCGTGGGACGGACGCAAGCTCGTCTCGAAGATCTGGTTGGCACTGTCGCCGGAGATGTTGCCGAAGCCAAAATGCAAATAAGCGATATTGCAAAAGGGTTGATATCTGAGAGTAGCACGATCCCCAAAACGTATGCCAACGCCGCAGCAGCCAAGCCCGGGCGTCGTCCGGCGCTTTATTCGATGGCGGTAACCTTTGAAGACGATCAAGAGACTGCGGAAGAGGTACTCGCGAGAGTAAAGAAGGCGGTTGACGCTGGGGGTACTGGCCTCAAGGTAAATAAAGTAAGAAAGGCCAAGAATAGCGCAGTCATACTAGGCTGCGACACGGAAATTGAACTGGAAAAGGTGAGAGAGAGGATAGAAAGCCACGGCGAGGGGTTAATCGTAAAGCCCATGAAGAACAAGGACCCACTCGTCGTCCTTAAAGACGTATTTATAGACAACGACGACGATGAAATGATAAAGGCCCTTTACGCCCAAAACACCGATATCTTCATGGGCCTATCACAAGAGGAGATGGACTTCATAATCAAATATAAAAAGAGGACCAGAAATCCTAAGACCTCCCACGTTGTCATCCAGGTACGGCCGAAGGTATGGCAGAGGATGACGGAGGCTGGCGCCCTCTATCTGGACCTGCAAAGAGTCAGGGTAGAGGACCAGTCTCCGCTCATTCAGTGCACGAAGTGCCTCGCTTTCGGACATGGCCGCAAATTATGCACCGAGAGTGTGGACAGGTGCAGTCACTGTGGAGGCCCACACCTACGCGAGAAATGCGCCGATTATGCCGCGGGAATCGAACCTCAGTGCTGCAATTGTCTACACTCCAAGTTGCGGAGTACGGATCACAACGCTTTCAGTGTCGAGTGTCCAACCCGCAAAAAGTGGGACTACCTGGCAAGATCAAACACGGCATACATATGA
Protein
MFRTPTTTGAVKKSTTPSPATSPAAVSEAARTFIKRPETKRRSLDNMDLYRRQQQNYAEIPSEKLLLEVMKTFEDIPSKVQQYPQMRRDIKSFLEVQSDRCIRMLFELSKRMKTLEAAAPETSTQTAALFSDKEQKLLEKLAEMENVITTRISQTEANLKKEVAELNSTNDDRGANIVEYVYNRFEEAKVAIGKSTEGVVGRTQARLEDLVGTVAGDVAEAKMQISDIAKGLISESSTIPKTYANAAAAKPGRRPALYSMAVTFEDDQETAEEVLARVKKAVDAGGTGLKVNKVRKAKNSAVILGCDTEIELEKVRERIESHGEGLIVKPMKNKDPLVVLKDVFIDNDDDEMIKALYAQNTDIFMGLSQEEMDFIIKYKKRTRNPKTSHVVIQVRPKVWQRMTEAGALYLDLQRVRVEDQSPLIQCTKCLAFGHGRKLCTESVDRCSHCGGPHLREKCADYAAGIEPQCCNCLHSKLRSTDHNAFSVECPTRKKWDYLARSNTAYI

Summary

Pfam
PF01826   TIL        + More
PF00078   RVT_1
PF14529   Exo_endo_phos_2
PF00098   zf-CCHC
Interpro
IPR002919   TIL_dom        + More
IPR036084   Ser_inhib-like_sf       
IPR001878   Znf_CCHC       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF57567   SSF57567        + More
SSF56219   SSF56219       
SSF57756   SSF57756       
Gene 3D

Ontologies

Topology

Length:
506
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00371
outside
1  -  506
 
 

Population Genetic Test Statistics

Pi
6.816315
Theta
17.34786
Tajima's D
-1.674818
CLR
0
CSRT
0.0404479776011199
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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