Gene

KWMTBOMO16538  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005642

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_cytokine_receptor_[Bombyx_mori]

Location

Bomo_Scaf007(+):114236-118089      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.943

CDS

ATGGAAAATCTTTCTGTGAATTTCGGAGGAACGAAGTGGAGTGATCTGCGGAGATTGCTTTTGTGTTTTAAATTAATGCTAATTTGGATTTTGTTGAGTTTGCCGTGTATATTCGCGCATTGTCAAGGCGTAGAAAATCTGTCAGTGGCAGTTTACCCCATGGGTAACCTGAAGGTGCACTATGGAGATTCCTTTGAACTATTTTGTGTGGCTGAAAAGTTCACGTCCGCCGATATTGAGTTTACAATGGGGGGTAAGACCATTCCTTCCGAAGTAGTAAACAGCACAACAATACGGCTTTACATGGAAAAACCCGAGAAACAAGTGAACACTTTTTATTGTCGTAATAAAAAAACAAACAAGATATGCACAAGCAGAGTGGTAGTGGACTCTACACCGATGGCAGTCACTGATTTTTCTTGTAAATCAAAAAATCTCGAGATTTTAAACTGTACTTGGATTGCTCCTGGACCTTTAAGTACGACCCAGAATTATATTACATTTTTGATTGATGGAAATGCTGTAGAACCCAGTACTCCGATCAGAGCGGATCAAACAAGATATTGGAACAGTTGGAATACTTACAGCATACCAAGATATAGACAAATGGAAAACAAGTATTATTTTTATTTGAGCTCGTGCAGTCCATTTGGTTGCAATAATCAAAGTTTTACAGTTGATCATTTCTCTATTGTGAAGCCTGATGCTCCAAGTAATTTGAAGGTAATAAGGAATTACACTAATGGGGTCTATCTACAATGGAATATACCTAATAACATGGTAGATTTATTGCCCTGTGGCGTTGATCATCGCATTGAATATCAAATTGATAAAATTGACAATAAATCTTATTTCCGAAGTGTGGATGCATCAAGTTTACCACCGAAAAATAGAACATATAAATTTTTACTAACAGATCTTCCTTATGCTCACATGAAATATGAAATCAGGATCTACATCAAATCTAAAGCTGCAGTGAAAGAAGAGTTTTGGTCAGACTTCACATATACCATGGTATATACACTTAGCGAGAGACCTAGAAGACCACCAGACACCGCAGTTGGAGCCTTTGATCAATCTTTATATCAAACAAATAGAATGATATACATTTATTGGAAACAACTTGAAGAATATGAAGAGGCAGGTACAAATTTCACTTACAAAGTTGTCGTTCATCATAAAAGCAATTATGAAACTTTGACAGCTGACAACAACAAAAGTTTGAGTTTTGTGGTCTTGGAAAAAGCACCATTTGATGCAATGGATGTCTACATTTGGTCTAGAAATGATAATGGATCTTCCATTAACAGCAGCCATCTGTACATTCCACCCAAAGAAGATACTGAAGCATTAAAAGTTTCTTCATTTACCAAACTAGCTTATGAAAATGGCGCATATAAATTGTCCTGGGTTGGTATAGAACATATTGACAATTATACACTTTTCTGGTGTCAACATAATAGTACAAAAATTTGTGCAGGCCGAATGAACTTCATTGTTTTAAGTGCCAATAAAACAATGCAAGTCATAGAACTACCTAGAGAAAACAGGTATCAGTTTGCCATATCGGCTAATAATGGGACGAAAACTAGTGGCATGGTATGGGCTATCTGTGATATATCTAAAGATGCAATTCCAATGTATGGTTTTCCGGTCAAAATGGACCATGGTATTCCAGGGAAAACTTTTGTAAAGATTAAATGGGCAATGACTTGTACACTTCAAGAAGGAATCATTACAGGATATTTGATCGCATATTGTCCTGCTCTAGATACCACTAATGTTTGTGCAACAAAAAATAAAACTAACTTATACATATCTAATCCTAAGCAAATGGAGATCAACATTACAAATCTTGAACCATACACTACATATATATTTACACTGGCATTGAACACCACTTATGGATTTAAAACAGTAGAAAATGCTTTCACGAGTATGACTACAACTGAAGATACTCCAACTAGTCCAGTTAATATTAATATAACCGATGTGCTTAGTGATTCATTGACGATTTCATGGGACCCACCTATTCATAAAAACGGAGTTATTGGAAAATATGTCATAAATAACTATGGTCAAGAAGTTTATGTAGAAAAAGTTTCAGATAAAGATGAAGATTCAAAAAGAAGGCATATTCGTTTGACTGGCTTACAGGGGTTTACTAATTATTCATTGAGTGTACAAGCATGTAGTACAGCTATAAGCAGTTGTTCGGTTTTGAATCCACATGATGCCCTTTTTGTCAGGACGAGAATAGGTCCTCCTAGTAAAATGAGGGCTCCAACTGTTAAAAATAATCCAGATTTTATTAAGTGGGTTCCACCAATAATACCAGGGGGGACGATTGACCTTTACCAAATTAAAAGGATTAAAGATGAGAGTGAAGCTGAAATAATAAATACTACAAACCTTTCATTTTCATTGATACATTGTGAAGGTGGAGTTGCCGGACAAACTTACCAAGTTAGAGCTGTTAATTTTGATGAAGATCCTTACCACGGTGCTTTAACTGACAATAAGGATGTATACCTACATAATGCTAACTATAAAGGTATACTAGAATATCCTGGAGAATGGAGTGAGCCAAGTTTTGTAAATTGTACAAGCAAAGAACATGTGACACTAACTCTTATTTTAATGGGAATATTTATGATAATTGGTATTATGTATGGTTTTATTAAATGTTACAAGAAATACCGAAAAATGGAAGATATTAAACCAGTTTTACCAAGTGGACTAGGAGTCCCCGAAAAGGATATTTCGAAATATGCTATTGGTGGTTGGAATCCTACAAACAAGGATGAGAAACCATCTTCAGACGAAATGTTGCTATTACCAAATAGTAGAACCACTGTATCTTCAGAATTGAAACAGAAAGAAAACAATAACAGTGCTTCTAGTGATCACACTGATAGTACAGCTTTATCAGATACATCACATGGGCCTGTAGAAAGACAAATCTCCTCATCTGATGATGGATCTAATTCATCACTACATCTTGAAGTAGAACCTACGAGAACAGCTGACAGTAACATCGATGGCGAATCATGCAATTCCGAAACTGAAACATCACAAATACCGTCACCATTCTTTAATGATAATACTTTCAAGAAAAATCCATGTGGCTATGTGCAACAATCTGTAGTGAGTCCTAATACAGGATATGTTCAAAGTGTTCAAGCAGGCGTTACAAACCCACCACAACCCTCATCACTCAGTGCCAGCTCTAGTTATGTAATGGCAGCTCTGTCTCCACCTATATTTACGACACGTGTTGCTCAACCTTGCGTAACGAGTTCACAATCAGCAGGAGGCTATGTGCACCCTGAAGGTGCTCAAACTATATCAGCAATGAATTTCCCGAAATTGGGGCAGACAACGAACAAACTGTTTGGTCCTGAAAGCTTGCCAACAATGCAAACCTTGCCACCAGCGAAACACACTGCAGACAGCAGCTACATTCAACTGCAATCTCTAGATTCCTTGCCCAGACACAAACATCCTGCCCGAAGTACAGTGCCATTAAAGACGCCAGCGTCTACCGGCTACGTCCGCCAAGGTGACGCTGTTATTAATAAGCACCTGAATAATATGCTATCAGGTGTTCATTGTGGCGAAGAATCGGCTATTTTGGATCCTGCAATGTCGCCTGACGCGTACTGCAGATTTTCATGGAGTACCGATCCAGCCAATGACAACATTCATTCGTTACTCGCCGATTCGCCTAGATTAAATTCATCGAAAAACGGAGTCAATCATTAG

Protein

MENLSVNFGGTKWSDLRRLLLCFKLMLIWILLSLPCIFAHCQGVENLSVAVYPMGNLKVHYGDSFELFCVAEKFTSADIEFTMGGKTIPSEVVNSTTIRLYMEKPEKQVNTFYCRNKKTNKICTSRVVVDSTPMAVTDFSCKSKNLEILNCTWIAPGPLSTTQNYITFLIDGNAVEPSTPIRADQTRYWNSWNTYSIPRYRQMENKYYFYLSSCSPFGCNNQSFTVDHFSIVKPDAPSNLKVIRNYTNGVYLQWNIPNNMVDLLPCGVDHRIEYQIDKIDNKSYFRSVDASSLPPKNRTYKFLLTDLPYAHMKYEIRIYIKSKAAVKEEFWSDFTYTMVYTLSERPRRPPDTAVGAFDQSLYQTNRMIYIYWKQLEEYEEAGTNFTYKVVVHHKSNYETLTADNNKSLSFVVLEKAPFDAMDVYIWSRNDNGSSINSSHLYIPPKEDTEALKVSSFTKLAYENGAYKLSWVGIEHIDNYTLFWCQHNSTKICAGRMNFIVLSANKTMQVIELPRENRYQFAISANNGTKTSGMVWAICDISKDAIPMYGFPVKMDHGIPGKTFVKIKWAMTCTLQEGIITGYLIAYCPALDTTNVCATKNKTNLYISNPKQMEINITNLEPYTTYIFTLALNTTYGFKTVENAFTSMTTTEDTPTSPVNINITDVLSDSLTISWDPPIHKNGVIGKYVINNYGQEVYVEKVSDKDEDSKRRHIRLTGLQGFTNYSLSVQACSTAISSCSVLNPHDALFVRTRIGPPSKMRAPTVKNNPDFIKWVPPIIPGGTIDLYQIKRIKDESEAEIINTTNLSFSLIHCEGGVAGQTYQVRAVNFDEDPYHGALTDNKDVYLHNANYKGILEYPGEWSEPSFVNCTSKEHVTLTLILMGIFMIIGIMYGFIKCYKKYRKMEDIKPVLPSGLGVPEKDISKYAIGGWNPTNKDEKPSSDEMLLLPNSRTTVSSELKQKENNNSASSDHTDSTALSDTSHGPVERQISSSDDGSNSSLHLEVEPTRTADSNIDGESCNSETETSQIPSPFFNDNTFKKNPCGYVQQSVVSPNTGYVQSVQAGVTNPPQPSSLSASSSYVMAALSPPIFTTRVAQPCVTSSQSAGGYVHPEGAQTISAMNFPKLGQTTNKLFGPESLPTMQTLPPAKHTADSSYIQLQSLDSLPRHKHPARSTVPLKTPASTGYVRQGDAVINKHLNNMLSGVHCGEESAILDPAMSPDAYCRFSWSTDPANDNIHSLLADSPRLNSSKNGVNH

Uniprot

H9J800   A0A2A4JEY4   A0A2H1W425   A0A194QS06   A0A194QCC0   D0AB85   + More
A0A1E1WQB5   A0A212EP81   A0A067QY05   A0A2J7RND0   A0A1B6FHK1   A0A1W4X647   A0A0L7RBM4   A0A0C9RA17   A0A087ZTT8   A0A158NRT1   A0A026WCE1   A0A195BR24   A0A195EG31   A0A0T6B8B1   A0A2A3EBU4   A0A2S2NC68   E0VQA0   A0A2H8TKM6   T1JBC3   B0XCW4   A0A0P6H834   A0A0P6GC09  

Pubmed

19121390    26354079    22118469    24845553    21347285    24508170    + More
30249741    20566863   

EMBL

BABH01020206    NWSH01001832    PCG69962.1    ODYU01006205    SOQ47849.1    KQ461155    + More
KPJ08303.1    KQ459232    KPJ02630.1    FP102340    CBH09280.1    GDQN01001839    JAT89215.1    AGBW02013517    OWR43293.1    KK853224    KDR09708.1    NEVH01002541    PNF42340.1    GECZ01020155    JAS49614.1    KQ414617    KOC68210.1    GBYB01005083    GBYB01005085    JAG74850.1    JAG74852.1    ADTU01024298    KK107274    QOIP01000008    EZA53737.1    RLU19892.1    KQ976424    KYM88588.1    KQ978983    KYN26832.1    LJIG01009181    KRT83594.1    KZ288291    PBC29205.1    GGMR01001923    MBY14542.1    DS235405    EEB15556.1    GFXV01002716    MBW14521.1    JH432010    DS232723    EDS45159.1    GDIQ01035546    JAN59191.1    GDIQ01035545    JAN59192.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000027135    + More
UP000235965    UP000192223    UP000053825    UP000005203    UP000005205    UP000053097    UP000279307    UP000078540    UP000078492    UP000242457    UP000009046    UP000002320   

PRIDE

H9J800   

Pfam

PF00041   fn3        + More
PF09240   IL6Ra-bind

Interpro

IPR036116   FN3_sf        + More
IPR003961   FN3_dom       
IPR013783   Ig-like_fold       
IPR015321   TypeI_recpt_CBD       
IPR003529   Hematopoietin_rcpt_Gp130_CS       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR036179   Ig-like_dom_sf       

SUPFAM

SSF49265   SSF49265        + More
SSF48726   SSF48726       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

H9J800   A0A2A4JEY4   A0A2H1W425   A0A194QS06   A0A194QCC0   D0AB85   + More
A0A1E1WQB5   A0A212EP81   A0A067QY05   A0A2J7RND0   A0A1B6FHK1   A0A1W4X647   A0A0L7RBM4   A0A0C9RA17   A0A087ZTT8   A0A158NRT1   A0A026WCE1   A0A195BR24   A0A195EG31   A0A0T6B8B1   A0A2A3EBU4   A0A2S2NC68   E0VQA0   A0A2H8TKM6   T1JBC3   B0XCW4   A0A0P6H834   A0A0P6GC09  

PDB

6IAA     E-value=0.00508117,     Score=99

KEGG

101742044    K19599 cytokine receptor domeless | (RefSeq) cytokine receptor

GO

GO:0016021   GO:0004896   GO:0005515   GO:0003676   GO:0008270   GO:0016787   GO:0005622   GO:0006915   GO:0016651   GO:0046835   GO:0006281   GO:0006259  

Length:

1254

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

40.4895400000001

Exp number, first 60 AAs:

19.01989

Total prob of N-in:

0.87579

POSSIBLE N-term signal

sequence

inside

1  -  19

TMhelix

20  -  42

outside

43  -  873

TMhelix

874  -  893

inside

894  -  1254

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.000008

CSRT

0

Interpretation

Uncertain