Gene

KWMTBOMO16536

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_xuthus]

Location

Bomo_Scaf007(+):103626-107726      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.713

CDS

ATGCCGATTGGGAAAGTTGAAAGTTTTGATATGGGATCTCAAAATTGGGACACATACATTCGTCGTGTAAAACAATTCATGGAACTCAACGACATTGAACAGAGACTTCACGTTGCAACGCTCGTGACCTTAGTTGGGTCTGAGTGCTATGACTTAATGTGTGACTTGTGTGCTCCGGACTTACCAGAAGAAAAGGATTTCGACATACTCGTAAAATTAGTCAAAGATCATCTAGAACCTGAAAGATCGGAAATAGCAGAACGTCATATCTTCAGGCAAAGAAAGCAGCAAAATAACGAAAGCATTCGTTCCTACCTACAAAGTTTGAAACATTTGGCTAAAACTTGCAATTTCGGCATCACATTAGAAATTAATCTACGCGATCAATTCGTATCAGGATTTTATAGTGAGGAGATGCGATCAAGGCTGTTTGCTGAAAAAGATATAGATTACAAGCGCGCTGTTGAGTTGGCATCAGCACTGGAAGCAGCGGATCGACATGCGATGGCGGCTGGGGGCATTGGGGGCAGCTCACAGGCTGCGTCCGAGAGCGAAGGCATGCATCGGGTCGGCGGAGCGCGCGCGGAGGCTCAATGCGCCTGCAGACGCTGCGGCAAGCTGGGCCATGCGGAGGGTCGGTGTCGGTACAAGCACTACACCTGTGACTCATGTGGCGAGAAGGGACACCTAAAATCAATGTGTCGGAACCGTAAAGGTAACCAAAAGATTGAAAAAAACCGAGGTCAGTACTATTTAAACCATAGTGACTGTGATTCTAGTGATAATAGTTTTTATAACTTAAAGGACCTGATCAGTAGCGAGGGTGAAGGACCATATTACGTGAAAATTTTTGTACAAAATGTTCCATGTAAATTTGAGATTGATACGGGTTGTAAAATTTCGGCCATATCTAAAGCTTTTTATGAAAAGCATTTTATGTGTATTCCTATACAAAGCGAAATCTTGAATTTTAGTTCATATACAGGCGATGTAATTGAGACTATCGGTTATATAATGGTAGACGTATCTTGTGGTCGTGAGTCCGCCAAATTAAAACTATATGTAATTAAAAACGGCGGCCCGCCACTGCTAGGCCGAATTTGGATTAAAATATTAAAATTAAGTTTTCTAAAATGTCATTCGATTTCTGAGACGACCTCGACGGTGGAGGCTTTACGAAACGAATTTCCAGAAGTGTTTGCTGGAGGTTTAGGAACATGTAAATCACGCATAAAATTACATCTAAAAGAAAAGACGCCAATATTTGTAAAAGCGCGGGCGCTGCCACTGGCGTTGCGCGAGCGCGTTGAGCGAGAACTTGATCGTTTACAAAGTGAGGGAGTTATTTACAAAGTAGATAGGTCTGATTACGGCACGCCTATCGTACCAGTCGTTAAGGCAAATGGCGATATTCGTATTTGCGGCGACTATAAAATCACAATAAACCCACGTCTGAAGGATTATCACTATCCTTTGCCGCACATTAAAGATTTGTTTGCCACTTTAGGTGGTGGTGAATATTACACAAAATTGGATTTATCTAATGCATTCCAGCAATGCCTCTTAGACGAAGAATCCCAGCCGATGACAGCGATCACGACACACATTGGTACTTTTGTCTATAAGCGCGTTCCGTTTGGAATTAAATGCATTCCGGAAAACTTTCAGAAGATTATGGAAGAGATTCTAAGTGGTCTGCCGTCAACCGTTATTTTTGCGGACGATATATGTGTAACCGGAAAAAACAGATTTGAACATTTATCAAATCTACGAGCAGTGTTGAGGAGACTCAAAGAAAACGGATTAAGAATTAATTATGACAAATGTAAATTCTTTCAAAGTTCTGTTACGTATTTAGGCTATAAAATAGACAAACAGGGCTTACACACTGACAAAAAGAAAGTTGATGCTATAGTGGCCGCCCCCGCACCTACGAATTTAACTCAATTGAGAAGTTTTATGGGTCTTGTTAATTTTTATTCGAACTTCGTTGTTAATATGAGTGATATTTTGAAACCTTTGTATAATTTGTTAAAAAAAAATGTAGAATGGTGTTGGACAGATAAATGTCATCAAGCATTTATACGAATTAAAAAAGTGTTAAGCAGCTCTCCGGTACTGGCACATTATAACCCAAATTCGCCATTAGTGCTGTCCGTTGACAGCAGCCAGTACGGACTGGGCGCCGTCCTCACTCAGAAGCACATCGACGGCACTGAGCGGCTCGTCAGCTGTGGCTCACGGACTCTCGCGCCAGCCGAACTTAACTATTCTCAGCTGGACAAAGAAGCTTTGGCTATAATGTTTGGGGTTACTAAACACCATCAGTATTTGTACGGGAGACGTTTTGTTTTACGAAGTGATCATAAGGCTTTGAGTTATATTCTTGGAAAGAATAAAGGTATACCTCTAACCGCCGCGAGTCGTCTGCAACGATTTGCTGTAAAGCTAGCTGCGTATGATTTTGAGATCGAATTTATTAGTTCTACAGATAATTGCCAGGCTGACGCGCTATCACGACTTCCACTGGATACTAATTTTAAGAATAATATTAAGGAATATAATTACCTAAACTTCGTTCAAGAAAGCTTTCCACTCAGTTTTAAAGAAATTAAAAAGGAAGTTGCGAAGGATCCTTTACTAAACAAAATTTACGGTTACGTCATGTTTGGCTGGCCCTCTGTCAGTAAAGAACAAGCAGAAAAACCCTATTTTAACAGAAGAGAATCCATACATATTGATCACGGTTGTCTTGTATGGGGTTACAGAATAATAATTCCAACTTCATTGCGAGAGACTGTGTTACAGGAGTTACATGAGGGACATCCGGGTATTGTTAAGATGAAACAATTAAGCCGGAACTACGTATGGTGGGAGACAGTCGATGCGGACATTGAACGTGTATGTGCTCAGTGCCAGGCCTGTCGATCTCAGCGCGCTGCACCACCATCGGTGCCGCTGCACTCGTGGCCATGGCCGGAAGAGCCGTGGGCGCGCCTTAATCTTGATTTCTTGGGACCGTTCAATAACAAATATTACTTAATTATAGTGGACGCTCATTCAAAATGGATCGAGGTGGAAAAATTGAGCTGTACATCAGCCACGGCTGTAATCGCATGTCTCAGACGATTGTTTGCTCGATTTGGCTTAGCAAAAAGGGTAGTTACTGATAACGGACCACCTTTCTCGTCGGTCGAATTTAGATCATATTTAAGTAAAAACGGTATAAAACATTTACCGGTGGCTCCGTATCATCCATCTAGCAATGGTGCAGCGGAAAACGCCGTAAAAACCATAAAAAGAGTGTTGAAAAAGGCTTTAATTGAAAAGGAAGACGACAATACCGCCTTGACAAAATTTCTCTTTATGTACAGAAATTCTGAGCATAGCACTACAGGGCGCGAACCAGCAGTTGCTTTGTTCGGACGTCGCCTGCGTGGAAGACTGGATCTGTTGCGTCCCAATACCAGCTCCATAGTACGAGAAGCACAGCTGGCAAGCGAAAGCTATAATGCAGGCACAGCCGGATATAGGGAGGCTGCAGAAGGAGACTCGGTCCTATTGCAAGATTTCACACAGGGAAAAAAGAAATGGACCCCAGGAACAATAAAAAACCGCTCAGGTCCGGTGACATACAGGGTAACAGCAGATGACGGGCGGGTACACAAACGTCACATCGACCAGATTTTAATAAGTAATAATAGTCGAAAATCACGTTATTCTTTGTCCAAATTAAACAATGATTTCGAGACAAAATCAGTAAATGATAGTGTGGGTGAAGCTCGGGAAAGTCCGGGTATGACCGGAGAAAAGGAGCTCAACTCCAGCTATGACACGGGACCGGAAAGTCCACAACCTGTGACTCCTAGTCACTCGCCGGCGCCGAATGTCTTGCAACCATCGCGTCAGCGCCGTAAAGCTGCTTTAACGTGTATTCAGAGAATTAAGGACCAAAATTACTAA

Protein

MPIGKVESFDMGSQNWDTYIRRVKQFMELNDIEQRLHVATLVTLVGSECYDLMCDLCAPDLPEEKDFDILVKLVKDHLEPERSEIAERHIFRQRKQQNNESIRSYLQSLKHLAKTCNFGITLEINLRDQFVSGFYSEEMRSRLFAEKDIDYKRAVELASALEAADRHAMAAGGIGGSSQAASESEGMHRVGGARAEAQCACRRCGKLGHAEGRCRYKHYTCDSCGEKGHLKSMCRNRKGNQKIEKNRGQYYLNHSDCDSSDNSFYNLKDLISSEGEGPYYVKIFVQNVPCKFEIDTGCKISAISKAFYEKHFMCIPIQSEILNFSSYTGDVIETIGYIMVDVSCGRESAKLKLYVIKNGGPPLLGRIWIKILKLSFLKCHSISETTSTVEALRNEFPEVFAGGLGTCKSRIKLHLKEKTPIFVKARALPLALRERVERELDRLQSEGVIYKVDRSDYGTPIVPVVKANGDIRICGDYKITINPRLKDYHYPLPHIKDLFATLGGGEYYTKLDLSNAFQQCLLDEESQPMTAITTHIGTFVYKRVPFGIKCIPENFQKIMEEILSGLPSTVIFADDICVTGKNRFEHLSNLRAVLRRLKENGLRINYDKCKFFQSSVTYLGYKIDKQGLHTDKKKVDAIVAAPAPTNLTQLRSFMGLVNFYSNFVVNMSDILKPLYNLLKKNVEWCWTDKCHQAFIRIKKVLSSSPVLAHYNPNSPLVLSVDSSQYGLGAVLTQKHIDGTERLVSCGSRTLAPAELNYSQLDKEALAIMFGVTKHHQYLYGRRFVLRSDHKALSYILGKNKGIPLTAASRLQRFAVKLAAYDFEIEFISSTDNCQADALSRLPLDTNFKNNIKEYNYLNFVQESFPLSFKEIKKEVAKDPLLNKIYGYVMFGWPSVSKEQAEKPYFNRRESIHIDHGCLVWGYRIIIPTSLRETVLQELHEGHPGIVKMKQLSRNYVWWETVDADIERVCAQCQACRSQRAAPPSVPLHSWPWPEEPWARLNLDFLGPFNNKYYLIIVDAHSKWIEVEKLSCTSATAVIACLRRLFARFGLAKRVVTDNGPPFSSVEFRSYLSKNGIKHLPVAPYHPSSNGAAENAVKTIKRVLKKALIEKEDDNTALTKFLFMYRNSEHSTTGREPAVALFGRRLRGRLDLLRPNTSSIVREAQLASESYNAGTAGYREAAEGDSVLLQDFTQGKKKWTPGTIKNRSGPVTYRVTADDGRVHKRHIDQILISNNSRKSRYSLSKLNNDFETKSVNDSVGEARESPGMTGEKELNSSYDTGPESPQPVTPSHSPAPNVLQPSRQRRKAALTCIQRIKDQNY

Uniprot

A0A1B6E6W0   A0A1B6CK52   A0A131XQT5   A0A3S2PB62   A0A3P8Q506   A0A1A7YSF0   + More
A0A3P8QD94   A0A3P8NHI5   A0A3Q1EQC9   A2TGR4   A2TGR5   A0A3P8VSE7   A0A267EVG4   A0A3P8NEQ7   A0A2S2PU23   A0A2I4C6V0   A0A1S3J391   J9L709   A0A1A7WUZ7   A0A267F699   A0A1Y1KIG3   A0A1Y1LR51   A0A3P8RGT3   A0A267FRX0   A0A2R2MK13   A0A1B6H651   A0A1X7TH22   A0A267F772   A0A3B3H2N7   A0A267GNB6   A0A1X7TIE8   A0A1Y1N2I4   A0A3B3B4L9   A0A1Y1KCE7   A0A1S3KHX3   Q5KTM2   A0A147ADQ5   A0A1Y1NFA4   A0A3S0ZSV8   A0A3P8NEP7   A0A0V1M0R9   A0A2S2P240   A0A0V0RTT5   A0A146M835   A0A3P8NV61   A0A1Y1NIP2   A0A267GR92   A0A085LTS7   A0A267EXJ4   X1WXW3   A0A2R5LIR9   A0A085M8Q0   A0A146NT21   A0A146XMZ2   J9L9M6   A0A0V0TT39   A0A0V1BVI1   A0A1Y1LWB5   K7JW34   A0A1Y1ML73   A0A2S2PLE8   T2MJH3   A0A0V1LU74   A0A1Y1MAK2   A0A0V0VH28   A0A0V1GSV8   A0A0V1MIE6   A0A1S3SSU6   A0A3R7DF32   A0A0V0USW3   A0A1A8QZH2   A0A0V0Z754   A0A1Y1M6T5   A0A1S3HLN2   A0A1X7VU64   A0A085LME0   A0A0V1HJS5   A0A0V0ZP51   A0A1Y1M058   A0A0V0RYP2   A0A0V1KNI7   A0A0V1M3Q7   A0A085MHF4   A0A2H8TQH2   A0A085LS29   A0A0A9X8H3   A0A147BQ83   A0A147BJS0   A0A2G8LB01   A0A1S3JKW9   A0A1Y1K5V5   A0A1Y1K0Y3   A0A267EMN7   J9JQE4   A0A267DYU7   A0A085LXT4   A0A131Z1D5   A0A0V0T3M4   A0A1W7R696  

Pubmed

17694394    24487278    26383154    28004739    17554307    29451363    + More
26823975    24929829    20075255    24065732    25401762    29652888    29023486    26830274   

EMBL

GEDC01007675    GEDC01003661    JAS29623.1    JAS33637.1    GEDC01023506    GEDC01023205    + More
JAS13792.1    JAS14093.1    GEFM01006397    JAP69399.1    RSAL01000130    RVE46453.1    HADX01010638    SBP32870.1    EF199621    ABM90392.1    EF199622    ABM90393.1    NIVC01001652    PAA65446.1    GGMR01020219    MBY32838.1    ABLF02016687    ABLF02016690    HADW01008367    SBP09767.1    NIVC01001377    PAA68677.1    GEZM01085308    JAV60010.1    GEZM01050895    JAV75318.1    NIVC01000860    PAA75827.1    GECU01037588    JAS70118.1    NIVC01001308    PAA69606.1    NIVC01000264    PAA86792.1    GEZM01014356    JAV92133.1    GEZM01092768    GEZM01092767    JAV56467.1    AB126055    BAD86655.1    GCES01009650    JAR76673.1    GEZM01009753    JAV94337.1    RQTK01000185    RUS85038.1    JYDO01000377    KRZ65389.1    GGMR01010825    MBY23444.1    JYDL01000080    KRX17894.1    GDHC01002706    JAQ15923.1    GEZM01001427    JAV97782.1    NIVC01000183    PAA88548.1    KL363295    KFD48373.1    NIVC01001575    PAA66240.1    ABLF02006499    ABLF02041879    GGLE01005288    MBY09414.1    KL363215    KFD53596.1    GCES01151725    JAQ34597.1    GCES01042893    JAR43430.1    ABLF02065955    JYDJ01000151    KRX42156.1    JYDH01000010    KRY40903.1    GEZM01050896    JAV75317.1    AAZX01023237    GEZM01030100    JAV85808.1    GGMR01017626    MBY30245.1    HAAD01006009    CDG72241.1    JYDW01000004    KRZ62956.1    GEZM01036245    JAV82862.1    JYDN01000036    KRX62850.1    JYDP01000327    KRZ01162.1    JYDO01000093    KRZ71620.1    NIRI01001153    RJW67559.1    JYDN01000181    KRX54093.1    HAEH01013823    SBR98409.1    JYDQ01000346    KRY08270.1    GEZM01042258    JAV80005.1    KL363391    KFD46136.1    JYDP01000057    KRZ10689.1    JYDQ01000124    KRY14116.1    GEZM01043158    JAV79264.1    JYDL01000058    KRX19511.1    JYDW01000348    KRZ48953.1    JYDO01000236    KRZ66548.1    KL363192    KFD56650.1    GFXV01004590    MBW16395.1    KL363314    KFD47775.1    GBHO01027669    GBHO01027668    JAG15935.1    JAG15936.1    GEGO01002490    JAR92914.1    GEGO01004367    JAR91037.1    MRZV01000143    PIK57404.1    GEZM01096183    JAV55075.1    GEZM01096184    JAV55073.1    NIVC01001899    PAA62793.1    ABLF02011319    ABLF02014651    ABLF02041920    NIVC01003024    PAA53787.1    KL363264    KFD49780.1    GEDV01003323    JAP85234.1    JYDJ01000764    KRX33566.1    GEHC01000992    JAV46653.1   

Proteomes

UP000283053    UP000265100    UP000257200    UP000265120    UP000215902    UP000192220    + More
UP000085678    UP000007819    UP000007879    UP000001038    UP000261560    UP000087266    UP000271974    UP000054843    UP000054630    UP000265000    UP000055048    UP000054776    UP000002358    UP000054721    UP000054681    UP000055024    UP000054783    UP000230750   

PRIDE

Q5KTM2   

Pfam

PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF00665   rve
PF00098   zf-CCHC
PF17917   RT_RNaseH
PF00077   RVP
PF00378   ECH_1
PF03732   Retrotrans_gag

Interpro

IPR001878   Znf_CCHC        + More
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001995   Peptidase_A2_cat       
IPR041373   RT_RNaseH       
IPR034128   K02A2.6-like       
IPR001969   Aspartic_peptidase_AS       
IPR018061   Retropepsins       
IPR001753   Enoyl-CoA_hydra/iso       
IPR029045   ClpP/crotonase-like_dom_sf       
IPR005162   Retrotrans_gag_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF50630   SSF50630       
SSF52096   SSF52096       

Gene 3D

2.40.70.10     3.30.420.10    

CDD

cd05484  retropepsin_like_LTR_2

ProteinModelPortal

A0A1B6E6W0   A0A1B6CK52   A0A131XQT5   A0A3S2PB62   A0A3P8Q506   A0A1A7YSF0   + More
A0A3P8QD94   A0A3P8NHI5   A0A3Q1EQC9   A2TGR4   A2TGR5   A0A3P8VSE7   A0A267EVG4   A0A3P8NEQ7   A0A2S2PU23   A0A2I4C6V0   A0A1S3J391   J9L709   A0A1A7WUZ7   A0A267F699   A0A1Y1KIG3   A0A1Y1LR51   A0A3P8RGT3   A0A267FRX0   A0A2R2MK13   A0A1B6H651   A0A1X7TH22   A0A267F772   A0A3B3H2N7   A0A267GNB6   A0A1X7TIE8   A0A1Y1N2I4   A0A3B3B4L9   A0A1Y1KCE7   A0A1S3KHX3   Q5KTM2   A0A147ADQ5   A0A1Y1NFA4   A0A3S0ZSV8   A0A3P8NEP7   A0A0V1M0R9   A0A2S2P240   A0A0V0RTT5   A0A146M835   A0A3P8NV61   A0A1Y1NIP2   A0A267GR92   A0A085LTS7   A0A267EXJ4   X1WXW3   A0A2R5LIR9   A0A085M8Q0   A0A146NT21   A0A146XMZ2   J9L9M6   A0A0V0TT39   A0A0V1BVI1   A0A1Y1LWB5   K7JW34   A0A1Y1ML73   A0A2S2PLE8   T2MJH3   A0A0V1LU74   A0A1Y1MAK2   A0A0V0VH28   A0A0V1GSV8   A0A0V1MIE6   A0A1S3SSU6   A0A3R7DF32   A0A0V0USW3   A0A1A8QZH2   A0A0V0Z754   A0A1Y1M6T5   A0A1S3HLN2   A0A1X7VU64   A0A085LME0   A0A0V1HJS5   A0A0V0ZP51   A0A1Y1M058   A0A0V0RYP2   A0A0V1KNI7   A0A0V1M3Q7   A0A085MHF4   A0A2H8TQH2   A0A085LS29   A0A0A9X8H3   A0A147BQ83   A0A147BJS0   A0A2G8LB01   A0A1S3JKW9   A0A1Y1K5V5   A0A1Y1K0Y3   A0A267EMN7   J9JQE4   A0A267DYU7   A0A085LXT4   A0A131Z1D5   A0A0V0T3M4   A0A1W7R696  

PDB

4OL8     E-value=5.3887e-53,     Score=530

KEGG

NA   

GO

GO:0015074   GO:0008270   GO:0003676   GO:0004190   GO:0003964   GO:0016787   GO:0005622   GO:0006915   GO:0016651   GO:0046835   GO:0006281   GO:0006259  

Length:

1320

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000800000000000001

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00002

outside

1  -  1320

 

 

Pi

15.959026

Theta

18.808697

Tajima's D

-0.949986

CLR

0

CSRT

0.147742612869357

Interpretation

Uncertain