Gene

KWMTBOMO16531

Pre Gene Modal

BGIBMGA005640

Annotation

Cockayne_syndrome_protein_[Operophtera_brumata]

Location

Bomo_Scaf007(+):62286-65386      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.689

CDS

ATGGTGGACATAAACAAATATTTAGAAATGCAACTTGAATTAGCGAAAAAGCAAATTGAGAGGAAAAATAGTCAGAAAGAAGATGTATCAACTAAAAGCAAATCTGCTGCTGATTACATATCGCAAAAACAGGCAAAGACTCTGTCAAAATTTCCCCACAATCAAAAAGTAGATGTAAAAACTACTGTGACATCAGGGACTTCAACTGAAGGACACCTCGATGACATCGATTTTGTACCTTCCGATGAGGAAGACGACAGTATCCATAATTTTCCGCTTACTGCGTGTTCTTCTCGTACCAAACAGAATATAAACCGAATTGTTGACGACGGTGATATTAAACAATACAATTTAAGGGTAGAGGTTTGGCGTGAAGGATTAAATACTGTGAAAAGCGGTACATATGAAGGATGCACGTTAACCGCTGACATACAGTACATCCTGGATGGTAATAAAGATAGCGATGAAATGCATGAACTCCAGAATGGTCTATTAGTACCAAAATATATTTGGAAACAGTTATATAAATTTCAAAGAACTGGTGTTAAATGGCTTTGGGAGTTGCATCAAGTGGATTCTGGTGGATTGTTAGGTGATGAAATGGGACTTGGTAAAACAATACAAGTCATTGCATTCCTAACTGCCCTTTCAAAAACCAATTTAGGATCATGGGGTGGTCTTGGTCCGAGTATCATTATCACACCTGCAACAGTTATATATCAATGGGTATCTCATTTTCATTATTGGTGCCCCCTGCTCAGAGTAGCTGTACTGCATCACACTGGCTCTCATGCTGGTAATCACCATAAACTATTAAGGGATATACACAGTGCTCATGGAATCTTGTTAGTAACATATGCAGGCATAGTAAAGTATCATAAAGAACTTAATGCTTATAGTTGGCATTATTTAATTTTGGATGAAGGACACAAAATACGTAATCCTGATACACAAGTAAGTAAAATTGTAAAAAAAATCCAGACACCACACAGATTGTTAATAACAGGCTCACCAATGCAGAACAGTTTGCAGGAACTGTGGTCATTATTTGATTTTATGAGGCCAGGTTTGTTGGGGACATACAATGCATTCATAGAACACTTTGCAGTTCCAATCACTCAAGGAGGCTATGCTAATGCTACTGAAATACAGGAAGCTACTGCCATGGAAATAGCTATTGCTTTGAAAAATATGATCACTCCTTACATGCTGAGGAGAACTAAGGCTGAGGTACAAGGACATATCAAACTCCCAGAAAAGAATGAACAAGTTCTATTCTGTTCTTTAACACAAGAGCAAAGAGATCTTTATATGGGTTACCTTATGAGTAATACAGTGAGAAGCATCTTAGACAAAGAAAATAAATTTGGAAATCCATTAAGAGCGAGGCTACTAGTGGCTCTGTCAACGCTAAGGAAAATATGCAATCATCCTGATATTTATCTCTACGAAGCTCAAGAAGATGAAGAACAGATAGATGAAGAGATATTTGGCCATTGGAAGAGATCTGGAAAAATGACTGTTGTTAATTCATTACTTAAAATATGGAAAAAACAGGGACATAGAGCTCTCATATTCTCTCAGTCAAGAGTAATGCTGTGTCTGTTAGAACAGTATTTACAAAATCAAGGCTTTACATACCTCAAAATGGATGGTACAGTTAATGTTGGCCAAAGGCAAAACTTGATTAAAACTTTTAATGATAACACTGATTATTTAGTTTTTCTTTCCACAACTAGAGTAGGTGGCTTAGGTGTAAATTTAACTGGAGCCGACAGAGTGATAATATATGATCCTGATTGGAATCCTGCAACAGATGATCAAGCAAAGGAAAGAGCATGGAGGATAGGCCAGTCTAGAAATGTAACAGTTTATAGATTGTTGTCAGCTGGGACTATAGAGGAAAAGATTTATCAGAGGCAGATATTCAAACATTTCTTGAGTAATAAAATTTTTGTGGACCCAAATCAAAAGAATTTTTTAACCACCAGTACATTACAGGGACTGTTCACTCTTGAAGAGCTTAACCGTGAAGGAGATACTGAAACTGCATCAATTTTTAAACATACCAAAATTATCAATAAAACCAATAAGAATGATAATGACTTGGATATTTCATCTAAAACAAAGTTAGAAGCCATGAAAAGATTAGCAAAAGAAATAAGTAAAAAAATATCAAAAGAATCCATGAAGGGAACACAGGAAAGTGATCCACGTGAAGAATATAAAAAGAAAAGAGAACAATTATTATGTCCACCTAAAGTGGAAGAACCAGATATTAATTTAGTTGATGATAAAATAACCAATGTAGCTTTTGAAGATGTTTTGTCAGAATTAGATATTGTAAAAATGCATGCAAAGAAAGATTATGAAGAACAATTGTTGAAAAGTGTACTAGAAGATAATGAACAAGATATTAAAGAAGTAGATGAAGAGAAACCTACCAACATTGACAACTCTCAACTTGAAACTAATGAAAGTACTGTAAAAGATATTAAACAAAAGCATAAAAAATCACATAAAATAAAGCGCAAAAGAAGATTATCATCTTCCATTGATGATGGACTCAAAAATTTAGTAACTGTAAAGAAAGTAAAGAAAAAGGATTATAGTAAAAATGAAGTAAAGAAACAAACTAATGATGATGACTATGTGTTAAACAAACTTTTTGCTAAAGCAGCAGTGAAAAACGCGTTACAACATGATGTGGTAGTTGGTTTAGCTGAAAGAGAAAAAAAACATAGATTGAAAGAAGAAGCTGCTAAAAGAGCTCGCAATGCGGTTAGAGCTGTTAAATTTTCATCAAAATAA

Protein

MVDINKYLEMQLELAKKQIERKNSQKEDVSTKSKSAADYISQKQAKTLSKFPHNQKVDVKTTVTSGTSTEGHLDDIDFVPSDEEDDSIHNFPLTACSSRTKQNINRIVDDGDIKQYNLRVEVWREGLNTVKSGTYEGCTLTADIQYILDGNKDSDEMHELQNGLLVPKYIWKQLYKFQRTGVKWLWELHQVDSGGLLGDEMGLGKTIQVIAFLTALSKTNLGSWGGLGPSIIITPATVIYQWVSHFHYWCPLLRVAVLHHTGSHAGNHHKLLRDIHSAHGILLVTYAGIVKYHKELNAYSWHYLILDEGHKIRNPDTQVSKIVKKIQTPHRLLITGSPMQNSLQELWSLFDFMRPGLLGTYNAFIEHFAVPITQGGYANATEIQEATAMEIAIALKNMITPYMLRRTKAEVQGHIKLPEKNEQVLFCSLTQEQRDLYMGYLMSNTVRSILDKENKFGNPLRARLLVALSTLRKICNHPDIYLYEAQEDEEQIDEEIFGHWKRSGKMTVVNSLLKIWKKQGHRALIFSQSRVMLCLLEQYLQNQGFTYLKMDGTVNVGQRQNLIKTFNDNTDYLVFLSTTRVGGLGVNLTGADRVIIYDPDWNPATDDQAKERAWRIGQSRNVTVYRLLSAGTIEEKIYQRQIFKHFLSNKIFVDPNQKNFLTTSTLQGLFTLEELNREGDTETASIFKHTKIINKTNKNDNDLDISSKTKLEAMKRLAKEISKKISKESMKGTQESDPREEYKKKREQLLCPPKVEEPDINLVDDKITNVAFEDVLSELDIVKMHAKKDYEEQLLKSVLEDNEQDIKEVDEEKPTNIDNSQLETNESTVKDIKQKHKKSHKIKRKRRLSSSIDDGLKNLVTVKKVKKKDYSKNEVKKQTNDDDYVLNKLFAKAAVKNALQHDVVVGLAEREKKHRLKEEAAKRARNAVRAVKFSSK

Uniprot

H9J7Z8   A0A0L7LLZ6   A0A2A4JD02   E3UKJ6   L7X1P1   D0AB88   + More
A0A194QXK5   A0A194QAY5   A0A2H1VL62   A0A212EP84   D6WQR8   A0A154PN39   A0A232FE21   A0A0L7QLV0   A0A1Y1KCK3   A0A151WWB2   A0A1Y1KDE8   A0A026W8Z2   A0A195CAG4   A0A158NED4   F4WJ78   A0A195BX22   A0A067QXI6   A0A151J6K1   A0A2Z5U5Z9   A0A0P6GYJ3   A0A0P5ZPG8   A0A0P6AVW5   A0A0P5DCD7   A0A165A3J8   A0A0P5D7G3   A0A0N8AA90   A0A0P5CLI3   A0A0P5D036   A0A0P5CLD2   A0A0P5DVE3  

Pubmed

19121390    26227816    23674305    26354079    22118469    18362917    + More
19820115    28648823    28004739    24508170    21347285    21719571    24845553    26760975   

EMBL

BABH01020201    JTDY01000686    KOB76216.1    NWSH01001832    PCG69965.1    HM449870    + More
ADO33005.1    KC469893    AGC92693.1    FP102340    CBH09283.1    KQ461155    KPJ08306.1    KQ459232    KPJ02627.1    ODYU01003152    SOQ41541.1    AGBW02013517    OWR43289.1    KQ971354    EFA07002.2    KQ434998    KZC13269.1    NNAY01000390    OXU28718.1    KQ414905    KOC59628.1    GEZM01088381    JAV58228.1    KQ982696    KYQ51971.1    GEZM01088380    JAV58230.1    KK107388    EZA51499.1    KQ978023    KYM97864.1    ADTU01013257    ADTU01013258    GL888182    EGI65656.1    KQ976401    KYM92518.1    KK853134    KDR10852.1    KQ979851    KYN18853.1    FX985816    BBA93703.1    GDIQ01039149    JAN55588.1    GDIP01041139    JAM62576.1    GDIP01025796    JAM77919.1    GDIP01159619    JAJ63783.1    LRGB01000642    KZS17136.1    GDIP01160127    JAJ63275.1    GDIP01167217    JAJ56185.1    GDIP01168822    JAJ54580.1    GDIP01168116    GDIP01167218    JAJ56184.1    GDIP01168821    JAJ54581.1    GDIP01168115    JAJ55287.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000053240    UP000053268    UP000007151    + More
UP000007266    UP000076502    UP000215335    UP000053825    UP000075809    UP000053097    UP000078542    UP000005205    UP000007755    UP000078540    UP000027135    UP000078492    UP000076858   

PRIDE

H9J7Z8   

Pfam

PF00176   SNF2_N        + More
PF00271   Helicase_C

Interpro

IPR014001   Helicase_ATP-bd        + More
IPR001650   Helicase_C       
IPR027417   P-loop_NTPase       
IPR038718   SNF2-like_sf       
IPR000330   SNF2_N       

SUPFAM

SSF52540   SSF52540       

Gene 3D

3.40.50.10810    

CDD

cd00079  HELICc

ProteinModelPortal

H9J7Z8   A0A0L7LLZ6   A0A2A4JD02   E3UKJ6   L7X1P1   D0AB88   + More
A0A194QXK5   A0A194QAY5   A0A2H1VL62   A0A212EP84   D6WQR8   A0A154PN39   A0A232FE21   A0A0L7QLV0   A0A1Y1KCK3   A0A151WWB2   A0A1Y1KDE8   A0A026W8Z2   A0A195CAG4   A0A158NED4   F4WJ78   A0A195BX22   A0A067QXI6   A0A151J6K1   A0A2Z5U5Z9   A0A0P6GYJ3   A0A0P5ZPG8   A0A0P6AVW5   A0A0P5DCD7   A0A165A3J8   A0A0P5D7G3   A0A0N8AA90   A0A0P5CLI3   A0A0P5D036   A0A0P5CLD2   A0A0P5DVE3  

PDB

5VVR     E-value=6.21939e-132,     Score=1209

KEGG

105841236    K10841 DNA excision repair protein ERCC-6 | (RefSeq) DNA excision repair protein ERCC-6-like

PATHWAY

03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0042254   GO:0006309   GO:0016787   GO:0005622   GO:0006915   GO:0016651   GO:0046835   GO:0006281   GO:0006259  

Length:

936

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.84395

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08040

outside

1  -  936

 

 

Pi

4.92906

Theta

15.389804

Tajima's D

-2.013367

CLR

0

CSRT

0.0117494125293735

Interpretation

Uncertain