SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16529
Pre Gene Modal
BGIBMGA005639
Annotation
PREDICTED:_DNA_fragmentation_factor_subunit_beta_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.972
 

Sequence

CDS
ATGAAGAAAGGTTATAAAGTGACTGGTGTTAAACGAGAAAAGAAAATTGGCGTGGCAGCTGAAAGTTTACACGAGTTGATCGAGAAATCACACAAAAAATTAGAATTCAATGTCAGCTGCGGAGAATGTAATTTATACGTGGCTGAAGATGGGACGCTAGTTGACAATGATGAGTACCTAGCCACTCTGCCACCACAAACCGTCTTCATTTTACTAAAGGGTTCAGAAAAGATGATAACAGATTTTGATTATTATTACAATATGATCCTGTCAACTAAGAAAGAGTATATAGATACAGGAGCAGCAGCCAAGCAGTTTTTATCGACAAACATCAAAGAGAAGTTCAAAGTCTTTCAAAAGTACATTGCATCTGCTGACGATGCTAGAATAGAGCTCAGCGAGAGAACACAAGATCCAGCTTGGTTTGAAGGTCTTGAACCCTCTGAGAAAACAAAAGAGCAATCAATGTCTAAACGGGTCAAAGAACGAATGCGTGGCTACTATTATAAGACGAAATCAGCACTGCAGTCTTCCGAAACATATGTGCAATCCCGCAACGGACGCGGTAAGAAAATTATCGATCAGTTTTTGTTAGATCTGCGCAAACTACTTGAATCGAACAAGTATAACGAGGACTATTTCAATCGTAAAGCAGACAAAAGCGTCCGAATGTGCAATGTGACTGGTCTCTTTGAATGCGGTGGTTTATGGAACAATAACAAATGTGCCTATGAAGGTGACCACATTATCAACCCATACCGGAGCCGCGAGGAACGAATCATATTCCAGACATGGAATTTGGATCACAAAATTGAACTCTCCCGTTCAATAATACCTAAAATTCTGGAAGCCATAGAAGTTTTGTATAAGGGTGATTTTAAATGTACAGTGTGCGACAAATACTCTAAACCGGGTAGCATTGATACAGATAGGTATTATCTGCAAATCTTTACAAAAAACAACCTCAAACTGGTTCACATTGTATGTCATCATAAGGGCAGGCACAATGCTGCCTCTGACGTTTACACTGTCTGCAACAATTGTAGCAGACATACTATTGAATATATATGA
Protein
MKKGYKVTGVKREKKIGVAAESLHELIEKSHKKLEFNVSCGECNLYVAEDGTLVDNDEYLATLPPQTVFILLKGSEKMITDFDYYYNMILSTKKEYIDTGAAAKQFLSTNIKEKFKVFQKYIASADDARIELSERTQDPAWFEGLEPSEKTKEQSMSKRVKERMRGYYYKTKSALQSSETYVQSRNGRGKKIIDQFLLDLRKLLESNKYNEDYFNRKADKSVRMCNVTGLFECGGLWNNNKCAYEGDHIINPYRSREERIIFQTWNLDHKIELSRSIIPKILEAIEVLYKGDFKCTVCDKYSKPGSIDTDRYYLQIFTKNNLKLVHIVCHHKGRHNAASDVYTVCNNCSRHTIEYI

Summary

EMBL
ODYU01003152    SOQ41544.1    GDQN01003780    JAT87274.1    KC469893    AGC92696.1    + More
FP102340    CBH09286.1    KQ461155    KPJ08298.1    JTDY01001151    KOB74728.1    AGBW02013517    OWR43285.1    KK852819    KDR15630.1    GDHC01011687    JAQ06942.1    NEVH01020852    PNF21196.1    GDHC01006685    JAQ11944.1    KQ971361    EFA08645.1    PYGN01000023    PSN57344.1    GEBQ01025132    JAT14845.1    GEDC01002535    JAS34763.1    KQ434856    KZC08761.1    ADMH02001555    ETN62080.1    KQ435720    KOX78649.1    KB631617    ERL84705.1    APGK01057068    KB741277    ENN71274.1    AXCM01005301    ABLF02033238    ABLF02033247    ABLF02033251    GBBI01003642    JAC15070.1    KQ768821    OAD53042.1    GGMS01010274    MBY79477.1    GFTR01005141    JAW11285.1    LJIG01016429    KRT80627.1    AJWK01011181    GBGD01002118    JAC86771.1    GDKW01001791    JAI54804.1    KK855487    PTY22785.1    KQ414614    KOC68920.1    KK107672    EZA48154.1    GEZM01083778    GEZM01083776    GEZM01083775    JAV61014.1    GECU01017939    JAS89767.1    GECU01037677    JAS70029.1    KQ977372    KYN03232.1    KQ982351    KYQ57238.1    RCHS01001413    RMX53745.1    KQ979039    KYN23398.1    KQ976475    KYM83920.1    GG666545    EEN57242.1    LSMT01000368    PFX19275.1    HAEJ01003516    SBS43973.1    HADY01007738    SBP46223.1    HADZ01013866    SBP77807.1    DS235008    EEB10404.1    HAEB01006242    SBQ52769.1    HADW01017958    SBP19358.1    HAED01015991    SBR02436.1    HAEH01006656    SBR79817.1    CM012443    RVE70103.1    GCES01125918    JAQ60404.1    NHOQ01000099    PWA32962.1    AERX01037009    AYCK01014051    GCES01002114    JAR84209.1    GBYX01476951    JAO04727.1    GCES01140179    JAQ46143.1    AF286179    BC092678    BC164850    AF426316    AAF99706.1    AAH92678.2    AAI64850.1    AAL40264.1    BC067602    AAH67602.1    NEDP02004099    OWF46705.1    HACG01044741    CEK91606.1    CR352301   
Pfam
PF09230   DFF40        + More
PF02017   CIDE-N
PF05997   Nop52
PF17906   HTH_48
Interpro
IPR003508   CIDE-N_dom        + More
IPR015311   DFF40_C       
IPR039729   DFF40       
IPR010301   Nop52       
IPR041426   Mos1_HTH       
PDB
1V0D     E-value=5.51898e-34,     Score=360

Ontologies

Topology

Length:
356
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000490000000000001
Exp number, first 60 AAs:
2e-05
Total prob of N-in:
0.04825
outside
1  -  356
 
 

Population Genetic Test Statistics

Pi
8.313663
Theta
13.196514
Tajima's D
-1.27026
CLR
0.058256
CSRT
0.0884455777211139
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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