Gene

KWMTBOMO16529

Pre Gene Modal

BGIBMGA005639

Annotation

PREDICTED:_DNA_fragmentation_factor_subunit_beta_[Amyelois_transitella]

Location

Bomo_Scaf007(+):49436-53202      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.972

CDS

ATGAAGAAAGGTTATAAAGTGACTGGTGTTAAACGAGAAAAGAAAATTGGCGTGGCAGCTGAAAGTTTACACGAGTTGATCGAGAAATCACACAAAAAATTAGAATTCAATGTCAGCTGCGGAGAATGTAATTTATACGTGGCTGAAGATGGGACGCTAGTTGACAATGATGAGTACCTAGCCACTCTGCCACCACAAACCGTCTTCATTTTACTAAAGGGTTCAGAAAAGATGATAACAGATTTTGATTATTATTACAATATGATCCTGTCAACTAAGAAAGAGTATATAGATACAGGAGCAGCAGCCAAGCAGTTTTTATCGACAAACATCAAAGAGAAGTTCAAAGTCTTTCAAAAGTACATTGCATCTGCTGACGATGCTAGAATAGAGCTCAGCGAGAGAACACAAGATCCAGCTTGGTTTGAAGGTCTTGAACCCTCTGAGAAAACAAAAGAGCAATCAATGTCTAAACGGGTCAAAGAACGAATGCGTGGCTACTATTATAAGACGAAATCAGCACTGCAGTCTTCCGAAACATATGTGCAATCCCGCAACGGACGCGGTAAGAAAATTATCGATCAGTTTTTGTTAGATCTGCGCAAACTACTTGAATCGAACAAGTATAACGAGGACTATTTCAATCGTAAAGCAGACAAAAGCGTCCGAATGTGCAATGTGACTGGTCTCTTTGAATGCGGTGGTTTATGGAACAATAACAAATGTGCCTATGAAGGTGACCACATTATCAACCCATACCGGAGCCGCGAGGAACGAATCATATTCCAGACATGGAATTTGGATCACAAAATTGAACTCTCCCGTTCAATAATACCTAAAATTCTGGAAGCCATAGAAGTTTTGTATAAGGGTGATTTTAAATGTACAGTGTGCGACAAATACTCTAAACCGGGTAGCATTGATACAGATAGGTATTATCTGCAAATCTTTACAAAAAACAACCTCAAACTGGTTCACATTGTATGTCATCATAAGGGCAGGCACAATGCTGCCTCTGACGTTTACACTGTCTGCAACAATTGTAGCAGACATACTATTGAATATATATGA

Protein

MKKGYKVTGVKREKKIGVAAESLHELIEKSHKKLEFNVSCGECNLYVAEDGTLVDNDEYLATLPPQTVFILLKGSEKMITDFDYYYNMILSTKKEYIDTGAAAKQFLSTNIKEKFKVFQKYIASADDARIELSERTQDPAWFEGLEPSEKTKEQSMSKRVKERMRGYYYKTKSALQSSETYVQSRNGRGKKIIDQFLLDLRKLLESNKYNEDYFNRKADKSVRMCNVTGLFECGGLWNNNKCAYEGDHIINPYRSREERIIFQTWNLDHKIELSRSIIPKILEAIEVLYKGDFKCTVCDKYSKPGSIDTDRYYLQIFTKNNLKLVHIVCHHKGRHNAASDVYTVCNNCSRHTIEYI

Uniprot

A0A2H1VMR1   A0A1E1WJU4   L7X1G4   D0AB91   A0A194QS01   A0A0L7LGR6   + More
A0A212EP59   A0A067QYQ3   A0A146LJ53   A0A2J7PXZ6   A0A146LWA4   D6WW09   A0A2P8ZLG4   A0A1B6KTR6   A0A1B6EA14   A0A154PA95   W5JGP2   A0A182J889   A0A0M9A9K2   U4U402   N6SU96   A0A182M0H1   A0A182VTZ2   A0A182NBH5   A0A182R3W6   J9KG38   A0A023F0S3   A0A310SHW6   A0A2S2QP19   A0A224XFN9   A0A0T6AZL6   A0A1B0ETL7   A0A069DSR6   A0A0P4VIT5   A0A2R7WW04   A0A0L7RDP7   A0A026VZ81   A0A1Y1KI19   A0A1B6IS96   A0A1B6H5P9   A0A195CRW1   A0A151XAD2   A0A3M6UJD4   A0A195EDW5   A0A151I3U3   C3YR00   A0A2B4RSP0   A0A1A8UA31   A0A1A7ZUX4   A0A1A8CD96   A0A3B3HC86   A0A1S3JSC1   E0VAJ8   A0A3P9LXE9   A0A1A8F3T9   A0A3B5KTP5   A0A1A7XMY2   M3ZSJ8   A0A1A8IYQ6   A0A1A8PFK5   A0A3Q2PQP1   A0A3B3CCN6   A0A3P9JSC5   A0A3B4E6T0   A0A3B5RC92   A0A3B5L6R9   W5LKE6   A0A3S2MZ49   A0A3B4ZY20   A0A146QWA2   A0A3Q2CW62   A0A3Q2PP69   A0A315WBV3   A0A2D0QWW1   A0A3Q2ZNK3   I3JHL3   A0A3B3UWV6   A0A3B3YXE0   A0A087X8J9   A0A3P9P2A0   A0A3Q3MMN0   A0A3Q2QVN8   A0A3Q3M567   A0A147B0E9   A0A0S7EI22   A0A2I4C784   A0A146PQC1   Q9DGL7   Q6NWG2   A0A210QD94   A0A3P8Q9I1   A0A3P9D373   A0A3Q3MAF1   A0A0B7BH20   Q1L9C6   A0A3Q1HMM0   A0A3Q2XWN8  

Pubmed

23674305    26354079    26227816    22118469    24845553    26823975    + More
18362917    19820115    29403074    20920257    23761445    23537049    25474469    26334808    27129103    24508170    28004739    30382153    18563158    17554307    26383154    20566863    23542700    29451363    25329095    29703783    25186727    28812685    23594743   

EMBL

ODYU01003152    SOQ41544.1    GDQN01003780    JAT87274.1    KC469893    AGC92696.1    + More
FP102340    CBH09286.1    KQ461155    KPJ08298.1    JTDY01001151    KOB74728.1    AGBW02013517    OWR43285.1    KK852819    KDR15630.1    GDHC01011687    JAQ06942.1    NEVH01020852    PNF21196.1    GDHC01006685    JAQ11944.1    KQ971361    EFA08645.1    PYGN01000023    PSN57344.1    GEBQ01025132    JAT14845.1    GEDC01002535    JAS34763.1    KQ434856    KZC08761.1    ADMH02001555    ETN62080.1    KQ435720    KOX78649.1    KB631617    ERL84705.1    APGK01057068    KB741277    ENN71274.1    AXCM01005301    ABLF02033238    ABLF02033247    ABLF02033251    GBBI01003642    JAC15070.1    KQ768821    OAD53042.1    GGMS01010274    MBY79477.1    GFTR01005141    JAW11285.1    LJIG01016429    KRT80627.1    AJWK01011181    GBGD01002118    JAC86771.1    GDKW01001791    JAI54804.1    KK855487    PTY22785.1    KQ414614    KOC68920.1    KK107672    EZA48154.1    GEZM01083778    GEZM01083776    GEZM01083775    JAV61014.1    GECU01017939    JAS89767.1    GECU01037677    JAS70029.1    KQ977372    KYN03232.1    KQ982351    KYQ57238.1    RCHS01001413    RMX53745.1    KQ979039    KYN23398.1    KQ976475    KYM83920.1    GG666545    EEN57242.1    LSMT01000368    PFX19275.1    HAEJ01003516    SBS43973.1    HADY01007738    SBP46223.1    HADZ01013866    SBP77807.1    DS235008    EEB10404.1    HAEB01006242    SBQ52769.1    HADW01017958    SBP19358.1    HAED01015991    SBR02436.1    HAEH01006656    SBR79817.1    CM012443    RVE70103.1    GCES01125918    JAQ60404.1    NHOQ01000099    PWA32962.1    AERX01037009    AYCK01014051    GCES01002114    JAR84209.1    GBYX01476951    JAO04727.1    GCES01140179    JAQ46143.1    AF286179    BC092678    BC164850    AF426316    AAF99706.1    AAH92678.2    AAI64850.1    AAL40264.1    BC067602    AAH67602.1    NEDP02004099    OWF46705.1    HACG01044741    CEK91606.1    CR352301   

Proteomes

UP000053240    UP000037510    UP000007151    UP000027135    UP000235965    UP000007266    + More
UP000245037    UP000076502    UP000000673    UP000075880    UP000053105    UP000030742    UP000019118    UP000075883    UP000075920    UP000075884    UP000075900    UP000007819    UP000092461    UP000053825    UP000053097    UP000078542    UP000075809    UP000275408    UP000078492    UP000078540    UP000001554    UP000225706    UP000001038    UP000085678    UP000009046    UP000265180    UP000261380    UP000002852    UP000265000    UP000261560    UP000265200    UP000261440    UP000018467    UP000261400    UP000265020    UP000221080    UP000264800    UP000005207    UP000261500    UP000261480    UP000028760    UP000242638    UP000261640    UP000192220    UP000242188    UP000265100    UP000265160    UP000000437    UP000265040    UP000264820   

Pfam

PF09230   DFF40        + More
PF02017   CIDE-N
PF05997   Nop52
PF17906   HTH_48

Interpro

IPR003508   CIDE-N_dom        + More
IPR015311   DFF40_C       
IPR039729   DFF40       
IPR010301   Nop52       
IPR041426   Mos1_HTH       

ProteinModelPortal

A0A2H1VMR1   A0A1E1WJU4   L7X1G4   D0AB91   A0A194QS01   A0A0L7LGR6   + More
A0A212EP59   A0A067QYQ3   A0A146LJ53   A0A2J7PXZ6   A0A146LWA4   D6WW09   A0A2P8ZLG4   A0A1B6KTR6   A0A1B6EA14   A0A154PA95   W5JGP2   A0A182J889   A0A0M9A9K2   U4U402   N6SU96   A0A182M0H1   A0A182VTZ2   A0A182NBH5   A0A182R3W6   J9KG38   A0A023F0S3   A0A310SHW6   A0A2S2QP19   A0A224XFN9   A0A0T6AZL6   A0A1B0ETL7   A0A069DSR6   A0A0P4VIT5   A0A2R7WW04   A0A0L7RDP7   A0A026VZ81   A0A1Y1KI19   A0A1B6IS96   A0A1B6H5P9   A0A195CRW1   A0A151XAD2   A0A3M6UJD4   A0A195EDW5   A0A151I3U3   C3YR00   A0A2B4RSP0   A0A1A8UA31   A0A1A7ZUX4   A0A1A8CD96   A0A3B3HC86   A0A1S3JSC1   E0VAJ8   A0A3P9LXE9   A0A1A8F3T9   A0A3B5KTP5   A0A1A7XMY2   M3ZSJ8   A0A1A8IYQ6   A0A1A8PFK5   A0A3Q2PQP1   A0A3B3CCN6   A0A3P9JSC5   A0A3B4E6T0   A0A3B5RC92   A0A3B5L6R9   W5LKE6   A0A3S2MZ49   A0A3B4ZY20   A0A146QWA2   A0A3Q2CW62   A0A3Q2PP69   A0A315WBV3   A0A2D0QWW1   A0A3Q2ZNK3   I3JHL3   A0A3B3UWV6   A0A3B3YXE0   A0A087X8J9   A0A3P9P2A0   A0A3Q3MMN0   A0A3Q2QVN8   A0A3Q3M567   A0A147B0E9   A0A0S7EI22   A0A2I4C784   A0A146PQC1   Q9DGL7   Q6NWG2   A0A210QD94   A0A3P8Q9I1   A0A3P9D373   A0A3Q3MAF1   A0A0B7BH20   Q1L9C6   A0A3Q1HMM0   A0A3Q2XWN8  

PDB

1V0D     E-value=5.51898e-34,     Score=360

KEGG

101743718    K02311 DNA fragmentation factor, 40 kD, beta subunit [EC:3.-.-.-] | (RefSeq) DNA fragmentation facto

GO

GO:0004536   GO:0006309   GO:0005634   GO:0005737   GO:0016021   GO:0000790   GO:0006364   GO:0030688   GO:0006915   GO:0016787   GO:0005622   GO:0016651   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR13067  

Length:

356

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000490000000000001

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.04825

outside

1  -  356

 

 

Pi

8.313663

Theta

13.196514

Tajima's D

-1.27026

CLR

0.058256

CSRT

0.0884455777211139

Interpretation

Uncertain