SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16526
Annotation
PREDICTED:_INO80_complex_subunit_C_[Amyelois_transitella]
Location in the cell
Mitochondrial   Reliability : 3.502
 

Sequence

CDS
ATGTCTAATGAATTAGAGAAATATTATTGTTTCAAGAGAGAAAACAAATTCATTGTAAAAAGTGGATCTAAAAAACGTATGTGGAGATCTTTAAAACAAATCTTAACAGCCGATCGAGCATTACCATGGCCAAATGAAGCAGTTTTATATTATTCAATAAATGCTCCGCCAACATTCAAACCTATTAAAAAATATTCAGACATATCAGGATTACCAGCACCATATATGGATAGACACTCAAAACTTTATTTTTCTAATGCTGAAGAATTTGCAACAGTCAGGAACCTTCCAATGGACATAACAGCAGGATATTTACAACTCAGAGGAGCAAACACTATCGTGGGATAA
Protein
MSNELEKYYCFKRENKFIVKSGSKKRMWRSLKQILTADRALPWPNEAVLYYSINAPPTFKPIKKYSDISGLPAPYMDRHSKLYFSNAEEFATVRNLPMDITAGYLQLRGANTIVG

Summary

EMBL
NWSH01007563    PCG62907.1    GAIX01000187    JAA92373.1    KC469893    AGC92698.1    + More
ODYU01003152    SOQ41546.1    FP102340    CBH09288.1    GDQN01001013    JAT90041.1    KQ461155    KPJ08296.1    KQ459232    KPJ02637.1    BABH01020197    AGBW02013517    OWR43284.1    KQ434856    KZC08700.1    GDAI01001028    JAI16575.1    GBYB01008570    JAG78337.1    KQ438551    KOX67173.1    KQ414614    KOC68825.1    KQ977726    KYN00293.1    NNAY01002764    OXU20613.1    GFDF01003304    JAV10780.1    ADTU01001303    GL440027    EFN66404.1    KQ983219    KYQ46534.1    LBMM01005677    KMQ91296.1    KK107293    QOIP01000005    EZA53334.1    RLU23076.1    GL451202    EFN79774.1    KQ976522    KYM82084.1    GL888217    EGI64717.1    AJWK01010437    KQ981855    KYN34754.1    GFDL01011236    JAV23809.1    DS231838    EDS33841.1    KQ971316    EEZ98770.1    AJVK01011728    GEDC01012681    JAS24617.1    KZ288427    PBC25881.1    JRES01001123    KNC25339.1    JXUM01118902    KQ566235    KXJ70297.1    AAAB01008964    EAU76314.1    APCN01000775    CH477228    EAT47050.1    GEZM01041321    GEZM01041320    JAV80512.1    ATLV01023791    KE525346    KFB49559.1    GANO01004321    JAB55550.1    GGFK01012248    MBW45569.1    CAQQ02031859    KB632308    ERL91957.1    GEBQ01021849    JAT18128.1    KQ980989    KYN10563.1    GL762728    EFZ20875.1    GGFJ01010876    MBW60017.1    GGFK01009633    MBW42954.1    GECZ01012680    JAS57089.1    ADMH02000463    ETN66380.1    GAMC01000824    GAMC01000823    JAC05733.1    GGFM01005840    MBW26591.1    AXCN02000808    GFXV01005220    MBW17025.1    GAHY01001442    JAA76068.1    GBGD01003475    JAC85414.1    GBBI01000596    JAC18116.1    APGK01023763    KB740512    ENN80511.1    DS235840    EEB18189.1    ACPB03021649    ABLF02029934    AK340009    BAH70686.1    GFTR01001555    JAW14871.1    GDKW01002296    JAI54299.1    JXJN01001542    GDRN01067655    JAI64337.1    GDHF01016746    JAI35568.1    KK852675    KDR18718.1    GBRD01013057    GBRD01013056    JAG52770.1    GBHO01016323    GBHO01016322    JAG27281.1    JAG27282.1    GECL01000201    JAP05923.1    KL205937    KFV77423.1    KK463913    KFQ80703.1    PPHD01008162    POI31604.1    KB743886    EOA96751.1    KK630440    KFV55388.1    KK644595    KFP98056.1    KK400496    KFV59645.1    KL893134    KGL80414.1   
Pfam
PF08265   YL1_C        + More
PF04157   EAP30
PF16087   DUF4817
Interpro
IPR013272   Vps72/YL1_C        + More
IPR029525   INO80C/Ies6       
IPR036390   WH_DNA-bd_sf       
IPR036388   WH-like_DNA-bd_sf       
IPR040608   Snf8/Vps36       
IPR037855   Vps36       
IPR032135   DUF4817       
SUPFAM
SSF46785   SSF46785       
Gene 3D
PDB
6FML     E-value=8.16151e-12,     Score=163

Ontologies

Topology

Length:
115
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00369
Exp number, first 60 AAs:
0.00204
Total prob of N-in:
0.33801
outside
1  -  115
 
 

Population Genetic Test Statistics

Pi
16.071147
Theta
20.170462
Tajima's D
-0.618374
CLR
0
CSRT
0.212689365531723
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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