SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16525  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005636
Annotation
hypothetical_protein_OBRU01_08954_[Operophtera_brumata]
Location in the cell
Nuclear   Reliability : 4.456
 

Sequence

CDS
ATGTCGTCTTCGTTCTTCCTCAAAGGCAAATCTAGACAAGTTCAAAAAAGAAAAGGAGAAAAAATAAAAAAGAAACCTGTGAAGAAATCGACACTTCCTAACCTAGAAAACGGACACGAATCGTCCGATAGTGACTTAGATTTAAAGAAATTTTCAGATGCAGAAGAATCTGAAAGTGATCATGAGACAGTGGAGGAAAAGAAATTAAGGTTAGCTAAAAAATACTTAGAGGAAATTGAGAAAGAAGAAGCTAAACGAGCCGAAGAAAAGGAGATCGATGATGCAGTCCAAAAACGTTTACAAAGAGATTATCTTGAACAGAGAGGGAAACTTAAATTGGAACTTGCTGATAAATATCAGGCACCTACTGACAGCGATGTCAAAGTCATACGAGCTAAAGAACATCGACTTACTCTCACATGTGTTTGTATCAGTAATGATAGTAGCTTAGTATTTACAGGCAGTAAATGTAGCACGATTGTTAAATGGAGTATCAAAGAAAAGAGAAAAGTTGGTACATTAACATATAAAACCCACTCGAATTTCTTAAAAGGTGGCATTACTAGTTTAGCTATATCAACAGATTCAAAATATCTCGCATCATCCGACGAGTCATCCAACATTCAAATTTGGGACCCAATAACCTTTAAGCATATACATACATTTAAAGGACACAAAGATTCTATCATAGGTCTAGTTTTTAGAAAGAATACACATGACATGTACTCTGCAAGTAAAGATCGCTCTGTAAAAATTTGGTCATTAGATGAAATGTCTTATGTGGAAACACTTTTTGGTCATCAAACTCCAATATCATCCATTGATGCATTGACAAGGGAGAGAGCAATAACATCTGGTGGCAGGGATAGTACAATTAGAATATGGAAAATAGTAGAGGAATCACAGCTAATATTCAATGGCCCTGTAGGTAGTCTTGATGAAGTGAAACTTTTGGATGAAGAACATTTTGTGTCTGGTAGTGATAATGGTTCCATTTGCCTATGGAGTGTCTTGAAGAAAAAACCATTATATATAGTCCCAGAGGCCCATGGCACCGAAAATGATGTTCCCAGGTGGATCACTAGCCTTGCAACTTTATTAAATTCAGATATTTTTGCATCTGGATCTTGGGACAATCAAATCAGACTGTGGAAAATTTATGACTCTTATAAGAAAGTTCAGCCTTTGTTCAGTATAGAAATAAATGGTTGTGTTAACTGTATGCAGTTTACTTGCGATGGTAATCAATTATATGTGGCAGTGGGACAAGAACACAAAGCTGGGAGGTGGTTTAAGTTGTCATCTGTCAAAAATGGTCTTGCAATTGTTAATTTTAAAATAAAATAA
Protein
MSSSFFLKGKSRQVQKRKGEKIKKKPVKKSTLPNLENGHESSDSDLDLKKFSDAEESESDHETVEEKKLRLAKKYLEEIEKEEAKRAEEKEIDDAVQKRLQRDYLEQRGKLKLELADKYQAPTDSDVKVIRAKEHRLTLTCVCISNDSSLVFTGSKCSTIVKWSIKEKRKVGTLTYKTHSNFLKGGITSLAISTDSKYLASSDESSNIQIWDPITFKHIHTFKGHKDSIIGLVFRKNTHDMYSASKDRSVKIWSLDEMSYVETLFGHQTPISSIDALTRERAITSGGRDSTIRIWKIVEESQLIFNGPVGSLDEVKLLDEEHFVSGSDNGSICLWSVLKKKPLYIVPEAHGTENDVPRWITSLATLLNSDIFASGSWDNQIRLWKIYDSYKKVQPLFSIEINGCVNCMQFTCDGNQLYVAVGQEHKAGRWFKLSSVKNGLAIVNFKIK

Summary

EMBL
BABH01020196    JTDY01001151    KOB74726.1    ODYU01003152    SOQ41547.1    NWSH01000227    + More
PCG78221.1    KQ459232    KPJ02638.1    FP102340    CBH09289.1    KC469893    AGC92699.1    KQ461155    KPJ08295.1    AGBW02013517    OWR43283.1    JN174180    AEN68499.1    JN174452    AEN67795.1    JN174181    AEN68500.1    JN174448    AEN67791.1    JN174455    AEN67798.1    JN174450    AEN67793.1    JN174457    AEN67800.1    JN174446    AEN67789.1    JN174443    AEN67786.1    JN174439    AEN67782.1    JN174442    AEN67785.1    JN174165    AEN68484.1    JN174162    AEN68481.1    JN174173    AEN68492.1    JN174167    AEN68486.1    JN174424    AEN67767.1    JN174434    AEN67777.1    JN174454    AEN67797.1    JN174441    AEN67784.1    JN174453    AEN67796.1    JN174427    AEN67770.1    JN174431    AEN67774.1    JN174422    AEN67765.1    JN174440    AEN67783.1    JN174179    AEN68498.1    JN174152    AEN68471.1    JN174419    AEN67762.1    JN174436    AEN67779.1    JN174154    AEN68473.1    JN174151    AEN68470.1    JN174153    AEN68472.1    JN174174    AEN68493.1    JN174168    AEN68487.1    JN174155    AEN68474.1    JN174163    AEN68482.1    JN174176    AEN68495.1    JN174169    AEN68488.1    JN174170    AEN68489.1    JN174428    AEN67771.1    JN174437    AEN67780.1    JN174433    AEN67776.1    JN174451    AEN67794.1    JN174432    AEN67775.1    JN174445    AEN67788.1    JN174449    AEN67792.1    JN174172    AEN68491.1    JN174435    AEN67778.1    JN174175    AEN68494.1    JN174160    AEN68479.1    JN174425    AEN67768.1    JN174156    AEN68475.1    JN174159    AEN68478.1    JN174157    AEN68476.1    JN174177    AEN68496.1    JN174150    AEN68469.1    JN174420    AEN67763.1    JN174438    AEN67781.1    JN174423    AEN67766.1    JN174164    AEN68483.1    JN174171    AEN68490.1    JN174429    AEN67772.1    JN174148    AEN68467.1    JN174421    AEN67764.1    JN174178    AEN68497.1    JN174161    AEN68480.1    JN174166    AEN68485.1    JN174430    AEN67773.1    JN174158    AEN68477.1    JN174149    AEN68468.1    JN174426    AEN67769.1    KK852798    KDR16357.1    NEVH01017443    PNF24480.1    PYGN01000234    PSN50565.1    GEZM01026224    JAV87135.1    LJIG01016083    KRT81666.1    APGK01017173    KB739998    KB631368    KB632318    ENN81940.1    ERL84269.1    ERL92258.1    BT127672    AEE62634.1    GG666574    EEN53296.1    GECZ01022367    JAS47402.1    NNAY01004383    OXU17969.1    GECU01007222    JAT00485.1    DS469722    EDO34676.1    GL732529    EFX86622.1    KQ434827    KZC07524.1    KQ435794    KOX73841.1   
Pfam
PF00400   WD40
Interpro
IPR020472   G-protein_beta_WD-40_rep        + More
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR039241   Rrp9-like       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR019775   WD40_repeat_CS       
SUPFAM
SSF50978   SSF50978       
Gene 3D
PDB
4JXM     E-value=1.03761e-87,     Score=825

Ontologies

Topology

Length:
448
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00216
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00158
outside
1  -  448
 
 

Population Genetic Test Statistics

Pi
9.249135
Theta
16.774747
Tajima's D
-1.268741
CLR
0
CSRT
0.0931453427328634
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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