Silkworm Genome Informatics Database

Gene

KWMTBOMO16524 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005635

Annotation

Sr_protein_[Bombyx_mori]

Location

Bomo_Scaf007(+):16836-20027 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.061

CDS

ATGAGTTACGGAAGACCTCCGCCACGAATCGATGGCATGGTCTCGTTAAAAGTAGATAATCTTACCTACCGAACGACGCCTGAAGACTTACGCCGCGTTTTCGAAAGGTGCGGAGAAGTTGGTGATATCTACATTCCCAGAGATCGGTACACAAGGGAAAGTAGAGGATTCGCCTTCGTGAGGTTTTTCGAGCGTCGTGACGCTGAAGAAGCCCTAGACACGATGGACGGACGAATGTTGGACGGCAGGGAACTTCGCGTTCAGATGGCGCGATATGGCGCAGGTCCAGGTCTCGTTCCCGCCGTCGTAGTTACTCGCGCAGTCGTAGCCGCAGCCGTTCGCGCAGTCGCTCTCGCTCTGACTCAAAGAGTTCCAGGGGACGTTCCCGCTCACACAGTCGTTCTCGCTCACGATCCAGACACTGAAATGTCCTTATGGTGTGAGAGTGTACCTGTTGAGAGCTGA

Protein

MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYGAGPGLVPAVVVTRAVVAAAVRAVALALTQRVPGDVPAHTVVLAHDPDTEMSLWCESVPVES

Uniprot

H9J7Z3

Pubmed

19121390

EMBL

BABH01020192

Proteomes

UP000005204

PRIDE

H9J7Z3

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR035979   RBD_domain_sf
IPR034893   SRSF2-like
IPR000504   RRM_dom

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

H9J7Z3

PDB

2LEC E-value=4.67419e-35, Score=364

KEGG

692842 K12891 splicing factor, arginine/serine-rich 2 | (RefSeq) Sr protein

PATHWAY

03040 Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003723 GO:0003676 GO:0000166 GO:0016459 GO:0006470 GO:0008138 GO:0016491 GO:0016651 GO:0046835 GO:0006281 GO:0006259

PANTHER

PTHR23147:SF145

Length:

154

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.49529

Exp number, first 60 AAs:

0

Total prob of N-in:

0.15449

outside

1 - 154

Pi

37.996569

Theta

20.243079

Tajima's D

-1.333524

CLR

0.027033

CSRT

0.0844957752112394

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree